Evidence map›Paper›PMID 25246396›Full record

ArticleAntimicrobial agents and chemotherapy2014

A novel high-throughput cell-based assay aimed at identifying inhibitors of DNA metabolism in bacteria.

Jun Fan, Boudewijn L M de Jonge, Kathy MacCormack, Shubha Sriram, Robert E McLaughlin, Helen Plant, Marian Preston, Paul R Fleming, Robert Albert, Melinda Foulk and 1 more

Abstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jun FanInfection Bioscience, AstraZeneca R&D Boston, Waltham, Massachusetts, USA.
Boudewijn L M de JongeInfection Bioscience, AstraZeneca R&D Boston, Waltham, Massachusetts, USA.
Kathy MacCormackInfection Bioscience, AstraZeneca R&D Boston, Waltham, Massachusetts, USA.
Shubha SriramInfection Bioscience, AstraZeneca R&D Boston, Waltham, Massachusetts, USA.
Robert E McLaughlinInfection Bioscience, AstraZeneca R&D Boston, Waltham, Massachusetts, USA.
Helen PlantDiscovery Sciences, AstraZeneca, Mereside, Alderley Park, Macclesfield, Cheshire, United Kingdom.
Marian PrestonDiscovery Sciences, AstraZeneca, Mereside, Alderley Park, Macclesfield, Cheshire, United Kingdom.
Paul R FlemingInfection Chemistry, AstraZeneca R&D Boston, Waltham, Massachusetts, USA.
Robert AlbertInfection Chemistry, AstraZeneca R&D Boston, Waltham, Massachusetts, USA.
Melinda FoulkInfection Chemistry, AstraZeneca R&D Boston, Waltham, Massachusetts, USA.
Scott D MillsInfection Bioscience, AstraZeneca R&D Boston, Waltham, Massachusetts, USA scott.mills@astrazeneca.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial biosensor strains can be useful tools for the discovery and characterization of antibacterial compounds. A plasmid-based reporter vector containing a transcriptional fusion between the recA promoter and green fluorescence protein gene was introduced into an Escherichia coli ΔtolC strain to create a biosensor strain that selectively senses inhibitors of DNA metabolism via the SOS response. The strain was used to develop a high-throughput assay to identify new inhibitors of DNA metabolism. Screening of the AstraZeneca compound library with this strain identified known inhibitors of DNA metabolism, as well as novel chemotypes. The cellular target of one novel series was elucidated as DNA gyrase through genetic characterization of laboratory-generated resistant mutants followed by 50% inhibitory concentration measurements in a DNA gyrase activity assay. These studies validated the use of this antibiotic biosensor strain to identify novel selective inhibitors of DNA metabolism by high-throughput screening.

Indexed as

Biosensing TechniquesHigh-Throughput Screening AssaysBacterial Outer Membrane ProteinsDNA, BacterialDNA GyraseEscherichia coliEscherichia coli ProteinsGene ExpressionGenes, ReporterGreen Fluorescent ProteinsInhibitory Concentration 50Membrane Transport ProteinsNucleic Acid Synthesis InhibitorsPlasmidsPromoter Regions, GeneticRec A RecombinasesBacterial Outer Membrane ProteinsDNA, BacterialDNA GyraseEscherichia coli ProteinsGreen Fluorescent ProteinsMembrane Transport ProteinsNucleic Acid Synthesis InhibitorsRec A RecombinasesRecombinant Fusion ProteinsSmall Molecule LibrariestolC protein, E coli

Identifiers

PMID25246396
PMCPMC4249574

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.