Evidence map›Paper›PMID 25245959›Full record

ArticleCurrent microbiology2015

Transcriptomic response of Enterococcus faecalis V583 to low hydrogen peroxide levels.

Xue Yan, Aurélie Budin-Verneuil, Nicolas Verneuil, Michael S Gilmore, Sébastien Artigaud, Yanick Auffray, Vianney Pichereau

Abstract read
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In one paragraph

Article in Current microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Transcriptome Changes ofFrontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Xue YanUnité de Recherche Risques Microbiens (U2RM), Equipe Stress Virulence, Université de Caen Basse-Normandie, 14032, Caen, France.
Aurélie Budin-Verneuil
Nicolas Verneuil
Michael S Gilmore
Sébastien Artigaud
Yanick Auffray
Vianney Pichereau
Université de Caen Normandie · FRHarvard University · USIfremer · FRInstitut de Recherche pour le Développement · FR

Funding

Technical Mother Machine CoreP01AI083214 · NIAID · SCHEPENS EYE RESEARCH INSTITUTE · PI Michael S Gilmore · 2009 to 2026
$39.4M
NIAID NIH HHS AI083214
6 · The paper itself

Abstract

Enterococcus faecalis is a Gram-positive commensal bacterium inhabiting the gastrointestinal tracts of human and other mammals, but is also increasingly recognized as an opportunistic human pathogen. Oxidative stress is one of the major challenges encountered by enterococci, both in their natural environment and during infection. In this paper, we evaluated the transcriptomic response of E. faecalis to oxidative stress, and showed that transcript abundance was reduced for 93 genes and increased for 39 genes during growth in medium containing 1.75 mM H2O2. The presence of hydrogen peroxide affected several metabolic pathways, including a large decrease in ethanolamine utilization and methylglyoxal metabolism, and an increase in transcript abundance for several transport systems. In particular, four operons encoding iron transporters appeared highly induced. By contrast, in our experimental conditions, the expression of most of the genes known to be involved in the enterococcal response to oxidative stress, did not appear significantly altered.

Indexed as

TranscriptomeAdaptation, BiologicalBiological TransportDose-Response Relationship, DrugEnterococcus faecalisEthanolamineGene Expression ProfilingGene Expression Regulation, BacterialGene Regulatory NetworksHumansHydrogen PeroxideMolecular Sequence AnnotationOxidative StressPyruvaldehydeEthanolamineHydrogen PeroxidePyruvaldehyde

Identifiers

PMID25245959
OpenAlexW2010243715

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.