ArticleGenome biology and evolution2014
Phylogenomics and evolutionary dynamics of the family Actinomycetaceae.
Article in Genome biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
14 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.
- The epidemiology, clinical presentation and treatment outcomes in CNS actinomycosis: a systematic review of reported cases.Orphanet journal of rare diseases · 2023Pooled it
- Preliminary evidence for developing safe and efficient fecal microbiota transplantation as potential treatment for aged related cognitive impairments.Frontiers in cellular and infection microbiology · 2023Trial
- Comparative Genome Analysis of 19Antibiotics (Basel, Switzerland) · 2022Article
- Antibacterial and anti-virulence effects of furazolidone on Trueperella pyogenes and Pseudomonas aeruginosa.BMC veterinary research · 2022Article
- Gut microbiome: A potential indicator for predicting treatment outcomes in major depressive disorder.Frontiers in neuroscience · 2022Article
- Periapical Actinomycosis: A Rare Subdivision of Cervicofacial Actinomycosis, Review of the Literature, and a Case Report.Case reports in dentistry · 2022Article
- The Pathogenic Role ofAntibiotics (Basel, Switzerland) · 2020Review
- Diagnosis and Management of Cervicofacial Actinomycosis: Lessons from Two Distinct Clinical Cases.Antibiotics (Basel, Switzerland) · 2020Article
- Microbiological and Clinical Aspects of CervicofacialDentistry journal · 2019Review
- Pathogenicity and Virulence ofInternational journal of molecular sciences · 2019Review
- Genome-Based Taxonomic Classification of the PhylumFrontiers in microbiology · 2018Article
- The Complete Genome Sequence ofGenome announcements · 2017Article
- Article
- Culturable diversity and antimicrobial activity of Actinobacteria from marine sediments in Valparaíso bay, Chile.Frontiers in microbiology · 2015Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
8 authors at 2 institutions in 2 countries.
Funding
Abstract
The family Actinomycetaceae comprises several important pathogens that impose serious threat to human health and cause substantial infections of economically important animals. However, the phylogeny and evolutionary dynamic of this family are poorly characterized. Here, we provide detailed description of the genome characteristics of Trueperella pyogenes, a prevalent opportunistic bacterium that belongs to the family Actinomycetaceae, and the results of comparative genomics analyses suggested that T. pyogenes was a more versatile pathogen than Arcanobacterium haemolyticum in adapting various environments. We then performed phylogenetic analyses at the genomic level and showed that, on the whole, the established members of the family Actinomycetaceae were clearly separated with high bootstrap values but confused with the dominant genus Actinomyces, because the species of genus Actinomyces were divided into three main groups with different G+C content. Although T. pyogenes and A. haemolyticum were found to share the same branch as previously determined, our results of single nucleotide polymorphism tree and genome clustering as well as predicted intercellular metabolic analyses provide evidence that they are phylogenetic neighbors. Finally, we found that the gene gain/loss events occurring in each species may play an important role during the evolution of Actinomycetaceae from free-living to a specific lifestyle.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.