Evidence map›Paper›PMID 25245030›Full record

ArticlePlant physiology2014

Variation in sulfur and selenium accumulation is controlled by naturally occurring isoforms of the key sulfur assimilation enzyme ADENOSINE 5'-PHOSPHOSULFATE REDUCTASE2 across the Arabidopsis species range.

Dai-Yin Chao, Patrycja Baraniecka, John Danku, Anna Koprivova, Brett Lahner, Hongbing Luo, Elena Yakubova, Brian Dilkes, Stanislav Kopriva, David E Salt

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 66 citations in OpenAlex.

  1. Identification of Sulfate Transporter Genes inPlants (Basel, Switzerland) · 2025
    Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Natural Variation inPlants (Basel, Switzerland) · 2022
    Article
  7. Ionomic Approaches for Discovery of Novel Stress-Resilient Genes in Plants.International journal of molecular sciences · 2021
    Review
  8. Article
  9. Article
  10. Sulfation pathways from red to green.The Journal of biological chemistry · 2019
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Frontiers in plant science · 2018
    Article
  16. Selenium and Sulfur to Produce Allium Functional Crops.Molecules (Basel, Switzerland) · 2017
    Review
  17. Article
  18. Review
  19. Article
  20. Selenium accumulation by plants.Annals of botany · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Dai-Yin ChaoInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen AB24 3UU, United Kingdom (D.-Y.C., J.D., D.E.S.);Department of Metabolic Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (P.B., A.K., S.K.); andDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907 (B.L., H.L., E.Y., B.D.).
Patrycja BaranieckaInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen AB24 3UU, United Kingdom (D.-Y.C., J.D., D.E.S.);Department of Metabolic Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (P.B., A.K., S.K.); andDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907 (B.L., H.L., E.Y., B.D.).
John DankuInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen AB24 3UU, United Kingdom (D.-Y.C., J.D., D.E.S.);Department of Metabolic Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (P.B., A.K., S.K.); andDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907 (B.L., H.L., E.Y., B.D.).
Anna KoprivovaInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen AB24 3UU, United Kingdom (D.-Y.C., J.D., D.E.S.);Department of Metabolic Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (P.B., A.K., S.K.); andDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907 (B.L., H.L., E.Y., B.D.).
Brett LahnerInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen AB24 3UU, United Kingdom (D.-Y.C., J.D., D.E.S.);Department of Metabolic Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (P.B., A.K., S.K.); andDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907 (B.L., H.L., E.Y., B.D.).
Hongbing LuoInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen AB24 3UU, United Kingdom (D.-Y.C., J.D., D.E.S.);Department of Metabolic Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (P.B., A.K., S.K.); andDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907 (B.L., H.L., E.Y., B.D.).
Elena YakubovaInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen AB24 3UU, United Kingdom (D.-Y.C., J.D., D.E.S.);Department of Metabolic Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (P.B., A.K., S.K.); andDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907 (B.L., H.L., E.Y., B.D.).
Brian DilkesInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen AB24 3UU, United Kingdom (D.-Y.C., J.D., D.E.S.);Department of Metabolic Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (P.B., A.K., S.K.); andDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907 (B.L., H.L., E.Y., B.D.).
Stanislav KoprivaInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen AB24 3UU, United Kingdom (D.-Y.C., J.D., D.E.S.);Department of Metabolic Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (P.B., A.K., S.K.); andDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907 (B.L., H.L., E.Y., B.D.).
David E SaltInstitute of Biological and Environmental Sciences, University of Aberdeen, Aberdeen AB24 3UU, United Kingdom (D.-Y.C., J.D., D.E.S.);Department of Metabolic Biology, John Innes Centre, Norwich NR4 7UH, United Kingdom (P.B., A.K., S.K.); andDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907 (B.L., H.L., E.Y., B.D.) david.salt@abdn.ac.uk.
Purdue University West Lafayette · USUniversity of Aberdeen · GBUniversity of Cologne · DEJohn Innes Centre · GB

Funding

The Genetic Basis of Natural Ionomic VariationR01GM078536 · NIGMS · PURDUE UNIVERSITY · PI GUERINOT, MARY LOU · 2007 to 2014
$2.6M
Biotechnology and Biological Sciences Research Council BB/J004561/1Biotechnology and Biological Sciences Research Council BB/L000113/1NIGMS NIH HHS 2R01GM078536NIGMS NIH HHS R01 GM078536
6 · The paper itself

Abstract

Natural variation allows the investigation of both the fundamental functions of genes and their role in local adaptation. As one of the essential macronutrients, sulfur is vital for plant growth and development and also for crop yield and quality. Selenium and sulfur are assimilated by the same process, and although plants do not require selenium, plant-based selenium is an important source of this essential element for animals. Here, we report the use of linkage mapping in synthetic F2 populations and complementation to investigate the genetic architecture of variation in total leaf sulfur and selenium concentrations in a diverse set of Arabidopsis (Arabidopsis thaliana) accessions. We identify in accessions collected from Sweden and the Czech Republic two variants of the enzyme ADENOSINE 5'-PHOSPHOSULFATE REDUCTASE2 (APR2) with strongly diminished catalytic capacity. APR2 is a key enzyme in both sulfate and selenate reduction, and its reduced activity in the loss-of-function allele apr2-1 and the two Arabidopsis accessions Hodonín and Shahdara leads to a lowering of sulfur flux from sulfate into the reduced sulfur compounds, cysteine and glutathione, and into proteins, concomitant with an increase in the accumulation of sulfate in leaves. We conclude from our observation, and the previously identified weak allele of APR2 from the Shahdara accession collected in Tadjikistan, that the catalytic capacity of APR2 varies by 4 orders of magnitude across the Arabidopsis species range, driving significant differences in sulfur and selenium metabolism. The selective benefit, if any, of this large variation remains to be explored.

Indexed as

Amino Acid SubstitutionArabidopsisArabidopsis ProteinsCzech RepublicGene FrequencyGenetic VariationGenome-Wide Association StudyIsoenzymesOxidoreductases Acting on Sulfur Group DonorsPhenotypePlant LeavesPlants, Genetically ModifiedPlant ShootsSeleniumSulfatesSulfurAPR2 protein, ArabidopsisArabidopsis ProteinsIsoenzymesOxidoreductases Acting on Sulfur Group DonorsSeleniumSulfatesSulfur

Identifiers

PMID25245030
PMCPMC4226352
OpenAlexW1950375970

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.