Evidence map›Paper›PMID 25244093›Full record

ArticleThe Journal of clinical investigation2014

Deep sequencing reveals stepwise mutation acquisition in paroxysmal nocturnal hemoglobinuria.

Wenyi Shen, Michael J Clemente, Naoko Hosono, Kenichi Yoshida, Bartlomiej Przychodzen, Tetsuichi Yoshizato, Yuichi Shiraishi, Satoru Miyano, Seishi Ogawa, Jaroslaw P Maciejewski and 1 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 137 citations in OpenAlex.

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  19. Spontaneous Remission in Paroxysmal Nocturnal Hemoglobinuria: An Extremely Rare CaseTurkish journal of haematology : official journal of Turkish Society of Haematology · 2022
    Article
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Wenyi Shen
Michael J Clemente
Naoko Hosono
Kenichi Yoshida
Bartlomiej Przychodzen
Tetsuichi Yoshizato
Yuichi Shiraishi
Satoru Miyano
Seishi Ogawa
Jaroslaw P Maciejewski
Hideki Makishima
Cleveland Clinic · USKyoto University of Education · JPCase Comprehensive Cancer CenterThe University of Tokyo · JPNanjing Medical University · CN

Funding

Predisposition to chromosomal alterations in MDSR01HL082983 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI MACIEJEWSKI, JAROSLAW P. · 2005 to 2008
$1.5M
Training/Research Center-Bone Marrow Failure SyndromesK24HL077522 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI MACIEJEWSKI, JAROSLAW P. · 2005 to 2014
$1.2M
LASER SCANNING CONFOCAL MICROSCOPE: NEUROSCIENCES10RR019391 · NCRR · UNIVERSITY OF LOUISVILLE · PI EPSTEIN, PAUL N. · 2004 to 2004
$315k
NCRR NIH HHS S10 RR019391NCRR NIH HHS U54 RR019391NHLBI NIH HHS K24 HL-077522NHLBI NIH HHS K24 HL077522NHLBI NIH HHS R01 HL082983NHLBI NIH HHS R01HL-082983
6 · The paper itself

Abstract

Paroxysmal nocturnal hemoglobinuria (PNH) is a nonmalignant clonal disease of hematopoietic stem cells that is associated with hemolysis, marrow failure, and thrombophilia. PNH has been considered a monogenic disease that results from somatic mutations in the gene encoding PIGA, which is required for biosynthesis of glycosylphosphatidylinisotol-anchored (GPI-anchored) proteins. The loss of certain GPI-anchored proteins is hypothesized to provide the mutant clone with an extrinsic growth advantage, but some features of PNH argue that there are intrinsic drivers of clonal expansion. Here, we performed whole-exome sequencing of paired PNH+ and PNH- fractions on samples taken from 12 patients as well as targeted deep sequencing of an additional 36 PNH patients. We identified additional somatic mutations that resulted in a complex hierarchical clonal architecture, similar to that observed in myeloid neoplasms. In addition to mutations in PIGA, mutations were found in genes known to be involved in myeloid neoplasm pathogenesis, including TET2, SUZ12, U2AF1, and JAK2. Clonal analysis indicated that these additional mutations arose either as a subclone within the PIGA-mutant population, or prior to PIGA mutation. Together, our data indicate that in addition to PIGA mutations, accessory genetic events are frequent in PNH, suggesting a stepwise clonal evolution derived from a singular stem cell clone.

Indexed as

AdolescentAdultAgedChildDioxygenasesDNA-Binding ProteinsDNA Mutational AnalysisExomeFemaleFlow CytometryHemoglobinuria, ParoxysmalHemolysisHigh-Throughput Nucleotide SequencingHumansJanus Kinase 2MaleDioxygenasesDNA-Binding ProteinsJAK2 protein, humanJanus Kinase 2Membrane ProteinsNeoplasm ProteinsNuclear Proteinsphosphatidylinositol glycan-class A proteinPolycomb Repressive Complex 2Proto-Oncogene ProteinsRibonucleoproteinsSplicing Factor U2AFSUZ12 protein, humanTET2 protein, humanTranscription FactorsU2AF1 protein, human

Identifiers

PMID25244093
PMCPMC4191017
OpenAlexW2116606728

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.