Evidence map›Paper›PMID 25243319›Full record

ArticleClinical genetics2015

APC promoter 1B deletion in seven American families with familial adenomatous polyposis.

A K Snow, T M F Tuohy, N R Sargent, L J Smith, R W Burt, D W Neklason

Open access · greenAbstract read
In one paragraph

Article in Clinical genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

  1. Analysis ofFrontiers in oncology · 2026
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  5. Constitutional chromothripsis of theJournal of medical genetics · 2022
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  10. Identification a nonsense mutation ofExperimental and therapeutic medicine · 2017
    Article
  11. Article
  12. Three novel mutations of APC gene in Chinese patients with familial adenomatous polyposis.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

A K SnowHuntsman Cancer Institute.
T M F TuohyHuntsman Cancer Institute.
N R SargentHuntsman Cancer Institute.
L J SmithHuntsman Cancer Institute.
R W BurtHuntsman Cancer Institute.
D W NeklasonHuntsman Cancer Institute.
Huntsman Cancer Institute · US

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI CORNELIA M ULRICH · 1986 to 2026
$72.6M
TCF/LEF function during intestinal maintenance and colon tumorigenesisP01CA073992 · NCI · UNIVERSITY OF UTAH · PI NEKLASON, DEBORAH WOOD · 1998 to 2014
$29.7M
INHERITANCE OF DISCRETE COLORECTAL ADENOMATOUS POLYPSR01CA040641 · NCI · UNIVERSITY OF UTAH · PI BURT, RANDALL WALTER · 1985 to 2007
$2.5M
NCI NIH HHS P01 CA073992NCI NIH HHS P01-CA073992NCI NIH HHS P30 CA042014NCI NIH HHS P30-CA42014NCI NIH HHS R01 CA040641NCI NIH HHS R01-CA040641
6 · The paper itself

Abstract

Familial adenomatous polyposis (FAP) is a colorectal cancer predisposition syndrome caused by mutations in the adenomatous polyposis coli (APC) gene. Clinical genetic testing fails to identify disease causing mutations in up to 20% of clinically apparent FAP cases. Following the inclusion of multiplex ligation-dependent probe amplification (MLPA) probes specific for APC promoter 1B, seven probands were identified with a deletion of promoter 1B. Using haplotype analysis spanning the APC locus, the seven families appear to be identical by descent from a common founder. The clinical phenotype of 19 mutation carriers is classical FAP with colectomy at an average age of 24. The majority of cases had a large number of duodenal and gastric polyps. Measurements of allele-specific expression of APC mRNA using TaqMan assay confirmed that relative expression in the allele containing the promoter 1B deletion was reduced 42-98%, depending on tissue type. This study confirms the importance of APC promoter deletions as a cause of FAP and identifies a founder mutation in FAP patients from the United States.

Indexed as

Promoter Regions, GeneticSequence DeletionAdenomatous Polyposis ColiAdenomatous Polyposis Coli ProteinAdultAmericasFounder EffectHaplotypesHumansMaleMiddle AgedRNA, MessengerAdenomatous Polyposis Coli ProteinAPC protein, humanRNA, Messengerallelic imbalanceAPCAPC promoter 1Bcolon cancerfamilial adenomatous polyposisfounder mutation

Identifiers

PMID25243319
PMCPMC4732873
OpenAlexW1932720411

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.