Evidence map›Paper›PMID 25243121›Full record

ArticleBioMed research international2014

Retrotransposon-based molecular markers for analysis of genetic diversity within the Genus Linum.

Nataliya V Melnikova, Anna V Kudryavtseva, Alexander V Zelenin, Valentina A Lakunina, Olga Yu Yurkevich, Anna S Speranskaya, Alexey A Dmitriev, Anastasia A Krinitsina, Maxim S Belenikin, Leonid A Uroshlev and 13 more

Abstract read
In one paragraph

Article in BioMed research international, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. History and prospects of flax genetic markers.Frontiers in plant science · 2024
    Review
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  4. Clarification of the Position ofPlants (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Nataliya V MelnikovaEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.
Anna V KudryavtsevaEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.
Alexander V ZeleninEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.
Valentina A LakuninaEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.
Olga Yu YurkevichEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.
Anna S SperanskayaEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia ; Department of Higher Plants, Lomonosov Moscow State University, Moscow 119991, Russia.
Alexey A DmitrievEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.
Anastasia A KrinitsinaDepartment of Higher Plants, Lomonosov Moscow State University, Moscow 119991, Russia.
Maxim S BelenikinEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia ; Research Institute of Physico-Chemical Medicine, Moscow 119435, Russia.
Leonid A UroshlevEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.
Anastasiya V SnezhkinaEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.
Asiya F SadritdinovaEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.
Nadezda V KorobanEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.
Alexandra V AmosovaEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.
Tatiana E SamatadzeEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.
Elena V GuzenkoInstitute of Genetics and Cytology, National Academy of Science of Belarus, 220072 Minsk, Belarus.
Valentina A LemeshInstitute of Genetics and Cytology, National Academy of Science of Belarus, 220072 Minsk, Belarus.
Anastasya M SavilovaResearch Center for Obstetrics, Gynecology and Perinatology, Moscow 117997, Russia.
Olga A RachinskaiaEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.
Natalya V KishlyanAll-Russian Research Institute for Flax of the Russian Academy of Agricultural Sciences, Torzhok 172002, Russia.
Tatiana A RozhminaAll-Russian Research Institute for Flax of the Russian Academy of Agricultural Sciences, Torzhok 172002, Russia.
Nadezhda L BolshevaEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.
Olga V MuravenkoEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SSAP method was used to study the genetic diversity of 22 Linum species from sections Linum, Adenolinum, Dasylinum, Stellerolinum, and 46 flax cultivars. All the studied flax varieties were distinguished using SSAP for retrotransposons FL9 and FL11. Thus, the validity of SSAP method was demonstrated for flax marking, identification of accessions in genebank collections, and control during propagation of flax varieties. Polymorphism of Fl1a, Fl1b, and Cassandra insertions were very low in flax varieties, but these retrotransposons were successfully used for the investigation of Linum species. Species clusterization based on SSAP markers was in concordance with their taxonomic division into sections Dasylinum, Stellerolinum, Adenolinum, and Linum. All species of sect. Adenolinum clustered apart from species of sect. Linum. The data confirmed the accuracy of the separation in these sections. Members of section Linum are not as closely related as members of other sections, so taxonomic revision of this section is desirable. L. usitatissimum accessions genetically distant from modern flax cultivars were revealed in our work. These accessions are of utmost interest for flax breeding and introduction of new useful traits into flax cultivars. The chromosome localization of Cassandra retrotransposon in Linum species was determined.

Indexed as

DNA FingerprintingDNA ProbesEcotypeFlaxGenetic MarkersGenetic VariationGenome, PlantIn Situ Hybridization, FluorescencePhylogenyPolymorphism, GeneticReproducibility of ResultsRetroelementsSpecies SpecificityDNA ProbesGenetic MarkersRetroelements

Identifiers

PMID25243121
PMCPMC4163409

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