Evidence map›Paper›PMID 25242324›Full record

ArticleCell reports2014

Identification of a dynamic core transcriptional network in t(8;21) AML that regulates differentiation block and self-renewal.

Anetta Ptasinska, Salam A Assi, Natalia Martinez-Soria, Maria Rosaria Imperato, Jason Piper, Pierre Cauchy, Anna Pickin, Sally R James, Maarten Hoogenkamp, Dan Williamson and 7 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 123 citations in OpenAlex.

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  12. Leukemic Stem Cells and Hematological Malignancies.International journal of molecular sciences · 2024
    Review
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26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 2 countries.

Anetta PtasinskaSchool of Cancer Sciences, College of Medicine and Dentistry, University of Birmingham, Birmingham B15 2TT, UK.
Salam A AssiSchool of Cancer Sciences, College of Medicine and Dentistry, University of Birmingham, Birmingham B15 2TT, UK; School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK.
Natalia Martinez-SoriaNorthern Institute for Cancer Research, University of Newcastle, Newcastle upon Tyne NE2 4HH, UK.
Maria Rosaria ImperatoSchool of Cancer Sciences, College of Medicine and Dentistry, University of Birmingham, Birmingham B15 2TT, UK.
Jason PiperWarwick Systems Biology Centre, University of Warwick, Coventry CV4 7AL, UK.
Pierre CauchySchool of Cancer Sciences, College of Medicine and Dentistry, University of Birmingham, Birmingham B15 2TT, UK.
Anna PickinSchool of Cancer Sciences, College of Medicine and Dentistry, University of Birmingham, Birmingham B15 2TT, UK.
Sally R JamesSection of Experimental Haematology, Leeds Institute for Molecular Medicine, University of Leeds, Leeds LS2 9JT, UK.
Maarten HoogenkampSchool of Cancer Sciences, College of Medicine and Dentistry, University of Birmingham, Birmingham B15 2TT, UK.
Dan WilliamsonNorthern Institute for Cancer Research, University of Newcastle, Newcastle upon Tyne NE2 4HH, UK.
Mengchu WuCancer Science Institute, National University of Singapore, Republic of Singapore, Singapore 117456, Singapore.
Daniel G TenenCancer Science Institute, National University of Singapore, Republic of Singapore, Singapore 117456, Singapore.
Sascha OttWarwick Systems Biology Centre, University of Warwick, Coventry CV4 7AL, UK.
David R WestheadSchool of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK.
Peter N CockerillSchool of Cancer Sciences, College of Medicine and Dentistry, University of Birmingham, Birmingham B15 2TT, UK.
Olaf HeidenreichNorthern Institute for Cancer Research, University of Newcastle, Newcastle upon Tyne NE2 4HH, UK. Electronic address: olaf.heidenreich@ncl.ac.uk.
Constanze BoniferSchool of Cancer Sciences, College of Medicine and Dentistry, University of Birmingham, Birmingham B15 2TT, UK. Electronic address: c.bonifer@bham.ac.uk.
University of Birmingham · GBNewcastle University · GBUniversity of Leeds · GBUniversity of Warwick · GBNational University Cancer Institute, Singapore · SGNational University of Singapore · SG

Funding

TYROSINE KINASE ONCOGENESIS IN MYELOID LEUKEMIAP01CA066996 · NCI · DANA-FARBER CANCER INSTITUTE · PI SCOTT A ARMSTRONG · 1996 to 2026
$52.5M
Molecular biology of myeloid differentiationR01HL112719 · NHLBI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI TENEN, DANIEL G · 2012 to 2015
$2.2M
Medical Research Council G0901579NCI NIH HHS P01 CA066996NHLBI NIH HHS R01 HL112719
6 · The paper itself

Abstract

Oncogenic transcription factors such as RUNX1/ETO, which is generated by the chromosomal translocation t(8;21), subvert normal blood cell development by impairing differentiation and driving malignant self-renewal. Here, we use digital footprinting and chromatin immunoprecipitation sequencing (ChIP-seq) to identify the core RUNX1/ETO-responsive transcriptional network of t(8;21) cells. We show that the transcriptional program underlying leukemic propagation is regulated by a dynamic equilibrium between RUNX1/ETO and RUNX1 complexes, which bind to identical DNA sites in a mutually exclusive fashion. Perturbation of this equilibrium in t(8;21) cells by RUNX1/ETO depletion leads to a global redistribution of transcription factor complexes within preexisting open chromatin, resulting in the formation of a transcriptional network that drives myeloid differentiation. Our work demonstrates on a genome-wide level that the extent of impaired myeloid differentiation in t(8;21) is controlled by the dynamic balance between RUNX1/ETO and RUNX1 activities through the repression of transcription factors that drive differentiation.

Indexed as

Translocation, GeneticAdaptor Proteins, Signal TransducingCCAAT-Enhancer-Binding Protein-alphaCell Line, TumorChromatin ImmunoprecipitationChromosome MappingChromosomes, Human, Pair 21Chromosomes, Human, Pair 8Core Binding Factor Alpha 2 SubunitGene Regulatory NetworksHumansLeukemia, Myeloid, AcuteLIM Domain ProteinsProtein BindingProto-Oncogene ProteinsProto-Oncogene Protein Spi-1Adaptor Proteins, Signal TransducingCCAAT-Enhancer-Binding Protein-alphaCore Binding Factor Alpha 2 SubunitLIM Domain ProteinsLMO2 protein, humanProto-Oncogene ProteinsProto-Oncogene Protein Spi-1RNA, MessengerRNA, Small InterferingTrans-Activators

Identifiers

PMID25242324
PMCPMC4487811
OpenAlexW2171572418

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.