Evidence map›Paper›PMID 25241981›Full record

ArticleThe Biochemical journal2014

Comparisons of subunit 5A and 5B isoenzymes of yeast cytochrome c oxidase.

Raksha Dodia, Brigitte Meunier, Christopher W M Kay, Peter R Rich

Open access · hybridAbstract readComparative Study
In one paragraph

Article in The Biochemical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Cryo-EM structure and kinetics reveal electron transfer by 2D diffusion of cytochromeProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. Article
  7. Rcf2 revealed in cryo-EM structures of hypoxic isoforms of mature mitochondrial III-IV supercomplexes.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  8. Article
  9. Tissue- and Condition-Specific Isoforms of Mammalian CytochromeOxidative medicine and cellular longevity · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Raksha Dodia*Institute of Structural and Molecular Biology, University College London, Gower Street, London WC1E 6BT, U.K.
Brigitte Meunier†Centre de Génétique Moléculaire du CNRS, UPR 3404, avenue de la Terrasse, Gif-sur-Yvette Cedex 91198, France.
Christopher W M Kay*Institute of Structural and Molecular Biology, University College London, Gower Street, London WC1E 6BT, U.K.
Peter R Rich*Institute of Structural and Molecular Biology, University College London, Gower Street, London WC1E 6BT, U.K.
Centre National de la Recherche Scientifique · FR

Funding

Biotechnology and Biological Sciences Research Council BB/F016948/1
6 · The paper itself

Abstract

Subunit 5 of Saccharomyces cerevisiae cytochrome c oxidase (CcO) is essential for assembly and has two isoforms, 5A and 5B. 5A is expressed under normoxic conditions, whereas 5B is expressed at very low oxygen tensions. As a consequence, COX5A-deleted strains (Δcox5A) have no or only low levels of CcO under normoxic conditions rendering them respiratory deficient. Previous studies have reported that respiratory growth could be restored by combining Δcox5A with mutations of ROX1 that encodes a repressor of COX5B expression. In these mutants, 5B isoenzyme expression level was 30-50% of wild-type (5A isoenzyme) and exhibited a maximum catalytic activity up to 3-fold faster than that of 5A isoenzyme. To investigate the origin of this effect, we constructed a mutant strain in which COX5B replaced COX5A downstream of the COX5A promoter. This strain expressed wild-type levels of the 5B isoenzyme, without the complication of additional effects caused by mutation of ROX1. When produced this way, the isoenzymes displayed no significant differences in their maximum catalytic activities or in their affinities for oxygen or cytochrome c. Hence the elevated activity of the 5B isoenzyme in the rox1 mutant is not caused simply by exchange of isoforms and must arise from an additional effect that remains to be resolved.

Indexed as

AnimalsElectron Transport Complex IVGene Expression Regulation, EnzymologicHorsesIsoenzymesKineticsOxygenProtein SubunitsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCox5a protein, S cerevisiaeCox5b protein, S cerevisiaeElectron Transport Complex IVIsoenzymesOxygenProtein SubunitsSaccharomyces cerevisiae Proteins

Identifiers

PMID25241981
PMCPMC4255728
OpenAlexW2035909851

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.