ArticleNature genetics2014
Genome sequence and genetic diversity of the common carp, Cyprinus carpio.
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Article in Nature genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 294 papers.
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294citing papers in PubMed
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294 citing papers in PubMed.
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- Effect of Packaging Method (Under Vacuum vs. Air) on Quality and Shelf Life of Carp (Molecules (Basel, Switzerland) · 2026Article
- Genomic Characterization and Phylogenetic Relationships ofAnimals : an open access journal from MDPI · 2026Article
- Meiotic Recombination in Teleosts.Advances in experimental medicine and biology · 2026Review
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- Assessing Current Fish Diversity in the Yellow River Basin by Integrating Large-Scale Barcoding and Morphological Data.Ecology and evolution · 2025Article
- Molecular Regulation of Growth in Aquaculture: From Genes to Sustainable Production.Life (Basel, Switzerland) · 2025Review
- Transcriptional Profiling of Common Carp: A Microarray-Based Framework for Aquaculture Research.International journal of molecular sciences · 2025Article
- Current State of Fish Reference Genome and Pangenome: Methodologies, Sampling Strategies, Quality Assessment and Future Perspectives to Aquaculture Breeding.Marine biotechnology (New York, N.Y.) · 2025Review
- Behavioral and circuit principles of temperature gradient navigation.Current biology : CB · 2025Article
- The Genome Survey Analysis of Female and MaleGenes · 2025Article
- Subgenome Partitioning and Polyploid Genome Evolution in the Loach Family Botiidae (Order Cypriniformes).Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025Article
- Article
- Expression pattern changes of three homeologs in chemokine activity enhance antiviral response to herpesvirus infection in a newly synthesized alloheptaploid.BMC genomics · 2025Article
- Genome-Wide Identification of DNA Methyltransferases (Dnmts) in Fish and Its Potential Roles During Sex Change in Blackhead Seabream.Biomolecules · 2025Article
234 more citing papers are in PubMed but not listed here.
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Authors and funding
53 authors.
Peng XuCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Xiaofeng ZhangHeilongjiang River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Harbin, China.
Xumin WangChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Jiongtang LiCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Guiming LiuChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Youyi KuangHeilongjiang River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Harbin, China.
Jian XuCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Xianhu ZhengHeilongjiang River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Harbin, China.
Lufeng RenChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Guoliang WangChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Yan ZhangCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Linhe HuoChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Zixia ZhaoCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Dingchen CaoHeilongjiang River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Harbin, China.
Cuiyun LuHeilongjiang River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Harbin, China.
Chao LiHeilongjiang River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Harbin, China.
Yi ZhouStem Cell Program, Division of Hematology and Oncology, Boston Children's Hospital and Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts, USA.
Zhanjiang Liu1] Centre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China. [2] Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures, Auburn University, Auburn, Alabama, USA.
Zhonghua FanChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Guangle ShanChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Xingang LiChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Shuangxiu WuChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Lipu SongChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Guangyuan HouCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Yanliang JiangCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Zsigmond JeneyResearch Institute for Fisheries, Aquaculture and Irrigation, Szarvas, Hungary.
Dan YuChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Li WangChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Changjun ShaoChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Lai SongChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Jing SunChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Peifeng JiCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Jian WangCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Qiang LiCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Liming XuCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Fanyue SunFish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures, Auburn University, Auburn, Alabama, USA.
Jianxin FengHenan Academy of Fishery Science, Zhengzhou, China.
Chenghui WangCollege of Fisheries and Life Science, Shanghai Ocean University, Shanghai, China.
Shaolin WangDepartment of Psychiatry and Neurobiology Science, University of Virginia, Charlottesville, Virginia, USA.
Baosen WangCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Yan LiCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Yaping ZhuCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Wei XueCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Lan ZhaoCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Jintu WangCentre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China.
Ying GuHeilongjiang River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Harbin, China.
Weihua LvHeilongjiang River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Harbin, China.
Kejing WuChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Jingfa XiaoChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Jiayan WuChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Zhang ZhangChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Jun YuChinese Academy of Sciences Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Xiaowen Sun1] Centre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China. [2] Heilongjiang River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Harbin, China.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The common carp, Cyprinus carpio, is one of the most important cyprinid species and globally accounts for 10% of freshwater aquaculture production. Here we present a draft genome of domesticated C. carpio (strain Songpu), whose current assembly contains 52,610 protein-coding genes and approximately 92.3% coverage of its paleotetraploidized genome (2n = 100). The latest round of whole-genome duplication has been estimated to have occurred approximately 8.2 million years ago. Genome resequencing of 33 representative individuals from worldwide populations demonstrates a single origin for C. carpio in 2 subspecies (C. carpio Haematopterus and C. carpio carpio). Integrative genomic and transcriptomic analyses were used to identify loci potentially associated with traits including scaling patterns and skin color. In combination with the high-resolution genetic map, the draft genome paves the way for better molecular studies and improved genome-assisted breeding of C. carpio and other closely related species.
Indexed as
Evolution, MolecularGenetic VariationAnimalsBase SequenceCarpsChromosome MappingGene Expression ProfilingGenomeGenome ComponentsMolecular Sequence DataSequence Analysis, DNASkinSpecies Specificity
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