Evidence map›Paper›PMID 25240281›Full record

ArticleNature genetics2014

PRC2 is recurrently inactivated through EED or SUZ12 loss in malignant peripheral nerve sheath tumors.

William Lee, Sewit Teckie, Thomas Wiesner, Leili Ran, Carlos N Prieto Granada, Mingyan Lin, Sinan Zhu, Zhen Cao, Yupu Liang, Andrea Sboner and 11 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Nature genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06114004 (Phase I/II Randomized Clinical Trial of Selinexor Plus Gemcitabine in Selected Advanced Soft-tissue Sarcomas), which is not on this map. Cited by 373 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
373citing papers in PubMed, 2 pooled it
25.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06114004 phase2recruitingnot on this mapstarted 2023, after this paper: background citation

Phase I/II Randomized Clinical Trial of Selinexor Plus Gemcitabine in Selected Advanced Soft-tissue Sarcomas

TypeinterventionalSponsorAsociación Europea y Latinoamericana SELNET para la Investigación en SarcomasRan2023 to 2026Enrolled88ConditionsSarcoma,Soft TissueArmsSelinexor 20 MG, Gemcitabine
3 · Its place in the literature

Who cites it

373 citing papers in PubMed, 2 syntheses or guidelines pooled it, 625 citations in OpenAlex.

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313 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 1 country.

William Lee1] Computational Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA. [2] Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, New York, USA.ORCID 0000000195824413
Sewit Teckie1] Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, New York, USA. [2] Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Thomas WiesnerHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Leili RanHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Carlos N Prieto GranadaDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Mingyan LinDepartment of Genetics, Albert Einstein College of Medicine, Bronx, New York, USA.
Sinan ZhuHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Zhen CaoHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Yupu LiangHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Andrea Sboner1] Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, New York, USA. [2] Institute for Computational Biomedicine, Weill Cornell Medical College, New York, New York, USA. [3] Institute for Precision Medicine, Weill Cornell Medical College, New York, New York, USA.
William D Tap1] Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, USA. [2] Department of Medicine, Weill Cornell Medical College, New York, New York, USA.
Jonathan A FletcherDepartment of Pathology, Brigham and Women's Hospital, Boston, Massachusetts, USA.
Kety H HubermanGenomics Core Laboratory, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Li-Xuan QinDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Agnes VialeGenomics Core Laboratory, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Samuel SingerDepartment of Surgery, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Deyou Zheng1] Department of Genetics, Albert Einstein College of Medicine, Bronx, New York, USA. [2] Department of Neurology, Albert Einstein College of Medicine, Bronx, New York, USA. [3] Department of Neuroscience, Albert Einstein College of Medicine, Bronx, New York, USA.ORCID 0000000343545337
Michael F Berger1] Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA. [2] Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Yu Chen1] Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA. [2] Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, USA. [3] Department of Medicine, Weill Cornell Medical College, New York, New York, USA.
Cristina R AntonescuDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Ping Chi1] Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA. [2] Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York, USA. [3] Department of Medicine, Weill Cornell Medical College, New York, New York, USA.
Memorial Sloan Kettering Cancer Center · USAlbert Einstein College of Medicine · USBrigham and Women's Hospital · USCornell University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Tissue and Pathology ResourcesP50CA127003 · NCI · DANA-FARBER CANCER INST · PI EL-BARDEESY, NABEEL, SELLERS, WILLIAM R · 2007 to 2023
$33.2M
MSKCC Center for Translational Cancer Genomic AnalysisU24CA143840 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI LADANYI, MARC, SANDER, CHRIS · 2009 to 2016
$11.5M
SPORE in Soft Tissue SarcomaP50CA140146 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI SPRIGGS, DAVID R · 2010 to 2014
$11.1M
Role of ETS factors in specifying prostate luminal cell identity and androgen receptor dependenceR01CA193837 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI SAWYERS, CHARLES L. · 2015 to 2025
$4.7M
An integrative approach to target lineage-specific oncogenic transcription factorDP2CA174499 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI CHI, PING · 2012 to 2012
$2.6M
Elucidating the roles of ETV1 in the pathogenesis of GISTK08CA151660 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI CHI, PING · 2011 to 2015
$848k
Understanding the roles of TMPRSS2 and ERG in pathogenesis of prostate cancer.K08CA140946 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI CHEN, YU · 2009 to 2013
$796k
NCI NIH HHS DP2 CA174499NCI NIH HHS K08 CA140946NCI NIH HHS K08CA140946NCI NIH HHS K08 CA151660NCI NIH HHS K08CA151660NCI NIH HHS P30 CA008748NCI NIH HHS P50 CA127003NCI NIH HHS P50 CA140146NCI NIH HHS P50CA140146NCI NIH HHS R01 CA193837NCI NIH HHS U24 CA143840NCI NIH HHS U24-CA143840
6 · The paper itself

Abstract

Malignant peripheral nerve sheath tumors (MPNSTs) represent a group of highly aggressive soft-tissue sarcomas that may occur sporadically, in association with neurofibromatosis type I (NF1 associated) or after radiotherapy. Using comprehensive genomic approaches, we identified loss-of-function somatic alterations of the Polycomb repressive complex 2 (PRC2) components (EED or SUZ12) in 92% of sporadic, 70% of NF1-associated and 90% of radiotherapy-associated MPNSTs. MPNSTs with PRC2 loss showed complete loss of trimethylation at lysine 27 of histone H3 (H3K27me3) and aberrant transcriptional activation of multiple PRC2-repressed homeobox master regulators and their regulated developmental pathways. Introduction of the lost PRC2 component in a PRC2-deficient MPNST cell line restored H3K27me3 levels and decreased cell growth. Additionally, we identified frequent somatic alterations of CDKN2A (81% of all MPNSTs) and NF1 (72% of non-NF1-associated MPNSTs), both of which significantly co-occur with PRC2 alterations. The highly recurrent and specific inactivation of PRC2 components, NF1 and CDKN2A highlights their critical and potentially cooperative roles in MPNST pathogenesis.

Indexed as

Base SequenceCell Line, TumorChromatin ImmunoprecipitationCyclin-Dependent Kinase Inhibitor p16DNA MethylationDNA PrimersGene Expression ProfilingGene Expression Regulation, NeoplasticGenomicsHistonesHumansImmunohistochemistryMolecular Sequence DataMutationNeoplasm ProteinsNeurilemmomaCyclin-Dependent Kinase Inhibitor p16DNA PrimersEED protein, humanHistonesNeoplasm ProteinsNeurofibromin 1Polycomb Repressive Complex 2SUZ12 protein, humanTranscription Factors

Identifiers

PMID25240281
PMCPMC4249650
OpenAlexW2070604281

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.