Evidence map›Paper›PMID 25238599›Full record

ArticlePloS one2014

Circadian genes, xBmal1 and xNocturnin, modulate the timing and differentiation of somites in Xenopus laevis.

Kristen L Curran, Latoya Allen, Brittany Bronson Porter, Joseph Dodge, Chelsea Lope, Gail Willadsen, Rachel Fisher, Nicole Johnson, Elizabeth Campbell, Brett VonBergen and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. It's about time: clocks in the developing lung.The Journal of clinical investigation · 2020
    Review
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Kristen L CurranUniversity of Wisconsin-Whitewater, Department of Biological Sciences, Whitewater, Wisconsin, United States of America.
Latoya AllenUniversity of Wisconsin-Whitewater, Department of Biological Sciences, Whitewater, Wisconsin, United States of America.
Brittany Bronson PorterUniversity of Wisconsin-Whitewater, Department of Biological Sciences, Whitewater, Wisconsin, United States of America.
Joseph DodgeUniversity of Wisconsin-Whitewater, Department of Biological Sciences, Whitewater, Wisconsin, United States of America.
Chelsea LopeUniversity of Wisconsin-Whitewater, Department of Biological Sciences, Whitewater, Wisconsin, United States of America.
Gail WilladsenUniversity of Wisconsin-Whitewater, Department of Biological Sciences, Whitewater, Wisconsin, United States of America.
Rachel FisherUniversity of Wisconsin-Whitewater, Department of Biological Sciences, Whitewater, Wisconsin, United States of America.
Nicole JohnsonUniversity of Wisconsin-Whitewater, Department of Biological Sciences, Whitewater, Wisconsin, United States of America.
Elizabeth CampbellUniversity of Wisconsin-Whitewater, Department of Biological Sciences, Whitewater, Wisconsin, United States of America.
Brett VonBergenUniversity of Wisconsin-Whitewater, Department of Biological Sciences, Whitewater, Wisconsin, United States of America.
Devon WinfreyUniversity of Wisconsin-Whitewater, Department of Biological Sciences, Whitewater, Wisconsin, United States of America.
Morgan HadleyUniversity of Wisconsin-Whitewater, Department of Biological Sciences, Whitewater, Wisconsin, United States of America.
Thomas KerndtUniversity of Wisconsin-Whitewater, Department of Biological Sciences, Whitewater, Wisconsin, United States of America.
University of Wisconsin–Whitewater · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have been investigating whether xBmal1 and xNocturnin play a role in somitogenesis, a cyclic developmental process with an ultradian period. Previous work from our lab shows that circadian genes (xPeriod1, xPeriod2, xBmal1, and xNocturnin) are expressed in developing somites. Somites eventually form the vertebrae, muscles of the back, and dermis. In Xenopus, a pair of somites is formed about every 50 minutes from anterior to posterior. We were intrigued by the co-localization of circadian genes in an embryonic tissue known to be regulated by an ultradian clock. Cyclic expression of genes involved in Notch signaling has been implicated in the somite clock. Disruption of Notch signaling in humans has been linked to skeletal defects in the vertebral column. We found that both depletion (morpholino) and overexpression (mRNA) of xBMAL1 protein (bHLH transcription factor) or xNOCTURNIN protein (deadenylase) on one side of the developing embryo led to a significant decrease in somite number with respect to the untreated side (p<0.001). These manipulations also significantly affect expression of a somite clock component (xESR9; p<0.05). We observed opposing effects on somite size. Depletion of xBMAL1 or xNOCTURNIN caused a statistically significant decrease in somite area (quantified using NIH ImageJ; p<0.002), while overexpression of these proteins caused a significant dose dependent increase in somite area (p<0.02; p<0.001, respectively). We speculate that circadian genes may play two separate roles during somitogenesis. Depletion and overexpression of xBMAL1 and NOCTURNIN both decrease somite number and influence expression of a somite clock component, suggesting that these proteins may modulate the timing of the somite clock in the undifferentiated presomitic mesoderm. The dosage dependent effects on somite area suggest that xBMAL1 and xNOCTURNIN may also act during somite differentiation to promote myogenesis.

Indexed as

AnimalsARNTL Transcription FactorsCell DifferentiationCircadian Rhythm Signaling Peptides and ProteinsNuclear ProteinsSomitesTime FactorsTranscription FactorsXenopus laevisARNTL Transcription FactorsCircadian Rhythm Signaling Peptides and ProteinsnocturninNuclear ProteinsTranscription Factors

Identifiers

PMID25238599
PMCPMC4169625
OpenAlexW2076387564

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.