Evidence map›Paper›PMID 25238136›Full record

ArticleBiochemistry2014

A radical intermediate in the conversion of pentachlorophenol to tetrachlorohydroquinone by Sphingobium chlorophenolicum.

Johannes Rudolph, Annette H Erbse, Linda S Behlen, Shelley D Copley

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Monooxygenation of aromatic compounds by flavin-dependent monooxygenases.Protein science : a publication of the Protein Society · 2019
    Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Johannes RudolphDepartment of Molecular, Cellular and Developmental Biology and the Cooperative Institute for Research in Environmental Sciences, and ‡Department of Chemistry and Biochemistry, University of Colorado Boulder , Boulder, Colorado 80309, United States.
Annette H Erbse
Linda S Behlen
Shelley D Copley
Cooperative Institute for Research in Environmental Sciences · USUniversity of Colorado Boulder · US

Funding

The Evolutionary Origin and Potential of Newly Recruited EnzymesR01GM078554 · NIGMS · UNIVERSITY OF COLORADO · PI COPLEY, SHELLEY D. · 2008 to 2011
$1.3M
NIGMS NIH HHS R01 GM078554
6 · The paper itself

Abstract

Pentachlorophenol (PCP) hydroxylase, the first enzyme in the pathway for degradation of PCP in Sphingobium chlorophenolicum, is an unusually slow flavin-dependent monooxygenase (k(cat) = 0.02 s⁻¹) that converts PCP to a highly reactive product, tetrachlorobenzoquinone (TCBQ). Using stopped-flow spectroscopy, we have shown that the steps up to and including formation of TCBQ are rapid (5-30 s⁻¹). Before products can be released from the active site, the strongly oxidizing TCBQ abstracts an electron from a donor at the active site, possibly a cysteine residue, resulting in an off-pathway diradical state that only slowly reverts to an intermediate capable of completing the catalytic cycle. TCBQ reductase, the second enzyme in the PCP degradation pathway, rescues this nonproductive complex via two fast sequential one-electron transfers. These studies demonstrate how adoption of an ancestral catalytic strategy for conversion of a substrate with different steric and electronic properties can lead to subtle yet (literally) radical changes in enzymatic reaction mechanisms.

Indexed as

Bacterial ProteinsBenzoquinonesBiocatalysisBiotransformationCatalytic DomainElectron Spin Resonance SpectroscopyEnvironmental PollutantsHydrocarbons, ChlorinatedHydroquinonesKineticsMixed Function OxygenasesNADPOxidation-ReductionPentachlorophenolProtein StabilityQuinone Reductases2,3,5,6-tetrachlorohydroquinoneBacterial ProteinsBenzoquinonesEnvironmental PollutantsHydrocarbons, ChlorinatedHydroquinonesMixed Function OxygenasesNADPPentachlorophenolpentachlorophenol monooxygenaseQuinone Reductasestetrachlorobenzoquinonetetrachlorobenzoquinone reductase, Sphingobium chlorophenolicum

Identifiers

PMID25238136
PMCPMC4204890
OpenAlexW2326148036

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.