Evidence map›Paper›PMID 25236368›Full record

ReviewProteomics2015

SUMO proteomics to decipher the SUMO-modified proteome regulated by various diseases.

Wei Yang, Wulf Paschen

Abstract readReview
In one paragraph

Review in Proteomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Regulation of SUMOylation on RNA metabolism in cancers.Frontiers in molecular biosciences · 2023
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. The Roles of SUMO in Metabolic Regulation.Advances in experimental medicine and biology · 2017
    Review
  17. Proteomics Research in Cardiovascular Medicine and Biomarker Discovery.Journal of the American College of Cardiology · 2016
    Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Wei YangMolecular Neurobiology Laboratory, Department of Anesthesiology, Duke University Medical Center, Durham, NC, USA.
Wulf Paschen
Duke University · US

Funding

Role of SUMO Conjugation in Ischemia: Significance, Mechanisms and PathwaysR01NS081299 · NINDS · DUKE UNIVERSITY · PI PASCHEN, WULF · 2012 to 2016
$1.7M
SUMO Conjugation and Deep Hypothermia-Induced Organ ProtectionR01HL095552 · NHLBI · DUKE UNIVERSITY · PI PASCHEN, WULF · 2010 to 2012
$1.2M
NHLBI NIH HHS R01 HL095552NINDS NIH HHS R01 NS081299
6 · The paper itself

Abstract

Small ubiquitin-like modifier (SUMO1-3) conjugation is a posttranslational protein modification whereby SUMOs are conjugated to lysine residues of target proteins. SUMO conjugation can alter the activity, stability, and function of target proteins, and thereby modulate almost all major cellular pathways. Many diseases are associated with SUMO conjugation, including heart failure, arthritis, cancer, degenerative diseases, and brain ischemia/stroke. It is, therefore, of major interest to characterize the SUMO-modified proteome regulated by these disorders. SUMO proteomics analysis is hampered by low levels of SUMOylated proteins. Several strategies have, therefore, been developed to enrich SUMOylated proteins from cell/tissue extracts. These include proteomics analysis on cells expressing epitope-tagged SUMO isoforms, use of monoclonal SUMO antibodies for immunoprecipitation and epitope-specific peptides for elution, and affinity purification with peptides containing SUMO interaction motifs to specifically enrich polySUMOylated proteins. Recently, two mouse models were generated and characterized that express tagged SUMO isoforms, and allow purification of SUMOylated proteins from complex organ extracts. Ultimately, these new analytical tools will help to decipher the SUMO-modified proteome regulated by various human diseases, and thereby, identify new targets for preventive and therapeutic purposes.

Indexed as

ProteomeSUMO-1 ProteinAnimalsBiomarkersHeart DiseasesHumansMiceNeoplasmsNeurodegenerative DiseasesProteomicsStrokeSumoylationBiomarkersProteomeSUMO-1 ProteinBiomarkerBiomedicineDisordersSUMOTherapeutic target

Identifiers

PMID25236368
PMCPMC4382800
OpenAlexW2013035668

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.