Evidence map›Paper›PMID 25234841›Full record

ArticleBreast cancer research and treatment2014

Genome-wide DNA methylation profiling reveals parity-associated hypermethylation of FOXA1.

Sagar Ghosh, Fei Gu, Chou-Miin Wang, Chun-Lin Lin, Joseph Liu, Howard Wang, Peter Ravdin, Yanfen Hu, Tim H M Huang, Rong Li

Open access · greenAbstract read
In one paragraph

Article in Breast cancer research and treatment, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
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  6. Article
  7. Article
  8. Deletion ofAmerican journal of cancer research · 2021
    Article
  9. Review
  10. Review
  11. FOXA1 Protein Expression in ERCancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2020
    Article
  12. Article
  13. Article
  14. Pregnancy duration and breast cancer risk.Nature communications · 2018
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 2 countries.

Sagar GhoshDepartment of Molecular Medicine, Cancer Therapy and Research Center, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.
Fei Gu
Chou-Miin Wang
Chun-Lin Lin
Joseph Liu
Howard Wang
Peter Ravdin
Yanfen Hu
Tim H M Huang
Rong Li
The University of Texas Health Science Center at San Antonio · US

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Lei Zheng · 1991 to 2026
$59.1M
Predicting Drug Resistance in Cancer Genomes by DMA Methylation ProfilingU54CA113001 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI HUANG, TIM H.-M. · 2004 to 2014
$16.1M
Regulation of hormone production by matrix proteinsR01CA161349 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LI, RONG · 2012 to 2016
$1.5M
The Mechanism of BRCA1 in Tumor SuppressionR01CA118578 · NCI · UNIVERSITY OF VIRGINIA · PI HU, YANFEN · 2006 to 2010
$1.1M
(PQA-2) Reprogramming of circulating adipose stromal cells by mechanical stressR21CA184084 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI HU, YANFEN, LI, RONG · 2014 to 2015
$354k
NCI NIH HHS CA118578NCI NIH HHS CA161349NCI NIH HHS P30 CA054174NCI NIH HHS P30CA054174NCI NIH HHS R01 CA118578NCI NIH HHS R01 CA161349NCI NIH HHS R21 CA184084NCI NIH HHS U54 CA113001
6 · The paper itself

Abstract

Early pregnancy in women by the age of 20 is known to have a profound effect on reduction of lifelong breast cancer risk as compared to their nulliparous counterparts. Additional pregnancies further enhance the protection against breast cancer development. Nationwide trend of delayed pregnancy may contribute to the recently reported increase in the incidence of advanced breast cancer among young women in this country. The underlying mechanism for the parity-associated reduction of breast cancer risk is not clearly understood. The purpose of the current study is to use whole-genome DNA methylation profiling to explore a potential association between parity and epigenetic changes in breast tissue from women with early parity and nulliparity. Breast tissue was collected from age-matched cancer-free women with early parity (age < 20; n = 15) or nulliparity (n = 13). The methyl-CpG binding domain-based capture-sequencing technology was used for whole-genome DNA methylation profiling. Potential parity-associated hypermethylated genes were further verified by locus-specific pyrosequencing, using an expanded cohort of parous (n = 19) and nulliparous (n = 16) women that included the initial samples used in the global analysis. Our study identified six genes that are hypermethylated in the parous group (P < 0.05). Pyrosequencing confirmed parity-associated hypermethylation at multiple CpG islands of the FOXA1 gene, which encodes a pioneer factor that facilitates chromatin binding of estrogen receptor α. Our work identifies several potential methylation biomarkers for parity-associated breast cancer risk assessment. In addition, the results are consistent with the notion that parity-associated epigenetic silencing of FOXA1 contributes to long-term attenuation of the estrogenic impact on breast cancer development.

Indexed as

DNA MethylationAdaptor Proteins, Signal TransducingAdultBreastBreast NeoplasmsCohort StudiesCpG IslandsEpigenesis, GeneticFemaleForkhead Transcription FactorsGenome-Wide Association StudyGuanine Nucleotide Exchange FactorsHepatocyte Nuclear Factor 3-alphaHumansMammaplastyMammary Glands, HumanAdaptor Proteins, Signal TransducingBCAR3 protein, humanForkhead Transcription FactorsFOXA1 protein, humanFOXC1 protein, humanGuanine Nucleotide Exchange FactorsHepatocyte Nuclear Factor 3-alpha

Identifiers

PMID25234841
PMCPMC4181377
OpenAlexW2092865996

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.