Evidence map›Paper›PMID 25233462›Full record

ArticlePLoS neglected tropical diseases2014

IL28B gene polymorphism SNP rs8099917 genotype GG is associated with HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP) in HTLV-1 carriers.

Tatiane Assone, Fernando Vieira de Souza, Karen Oliveira Gaester, Luiz Augusto Marcondes Fonseca, Olinda do Carmo Luiz, Fernanda Malta, João Renato Rebello Pinho, Fernanda de Toledo Gonçalves, Alberto Jose da Silva Duarte, Augusto Cesar Penalva de Oliveira and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Association BetweenPathogens (Basel, Switzerland) · 2025
    Pooled it
  2. Review
  3. Article
  4. Association of theViruses · 2022
    Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Human Genetic Determinants of Viral Diseases.Annual review of genetics · 2017
    Review
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  14. Review
  15. Review
  16. Article
  17. In vitro basal T-cell proliferation among asymptomatic Human T cell Leukemia Virus type 1 patients co-infected with hepatitis C and/or Human Immunodeficiency Virus type 1.The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases
    Article
  18. Pathogenesis of HTLV-1 infection and progression biomarkers: An overview.The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Tatiane AssoneLaboratório de Dermatologia e Imunodeficiências, Departamento de Dermatologia, Faculdade de Medicina da Universidade de São Paulo, São Paulo, São Paulo, Brazil; Instituto de Medicina Tropical de São Paulo, São Paulo, São Paulo, Brazil.
Fernando Vieira de SouzaInstituto de Doenças Infecciosas "Emilio Ribas" (IIER) de São Paulo, São Paulo, São Paulo, Brazil.
Karen Oliveira GaesterLaboratório de Dermatologia e Imunodeficiências, Departamento de Dermatologia, Faculdade de Medicina da Universidade de São Paulo, São Paulo, São Paulo, Brazil; Instituto de Medicina Tropical de São Paulo, São Paulo, São Paulo, Brazil.
Luiz Augusto Marcondes FonsecaDepartamento de Medicina Preventiva, Faculdade de Medicina da Universidade de São Paulo, São Paulo, São Paulo, Brazil.
Olinda do Carmo LuizDepartamento de Medicina Preventiva, Faculdade de Medicina da Universidade de São Paulo, São Paulo, São Paulo, Brazil.
Fernanda MaltaInstituto de Medicina Tropical de São Paulo, São Paulo, São Paulo, Brazil.
João Renato Rebello PinhoInstituto de Medicina Tropical de São Paulo, São Paulo, São Paulo, Brazil.
Fernanda de Toledo GonçalvesLaboratório de Imuno-hematologia e Hematologia Forense - LIM40, Departamento de Medicina Legal, Ética Médica, Medicina Social e do Trabalho, Faculdade de Medicina da Universidade de São Paulo, Sao Paulo, São Paulo, Brazil.
Alberto Jose da Silva DuarteLaboratório de Dermatologia e Imunodeficiências, Departamento de Dermatologia, Faculdade de Medicina da Universidade de São Paulo, São Paulo, São Paulo, Brazil.
Augusto Cesar Penalva de OliveiraInstituto de Doenças Infecciosas "Emilio Ribas" (IIER) de São Paulo, São Paulo, São Paulo, Brazil.
Jorge CassebLaboratório de Dermatologia e Imunodeficiências, Departamento de Dermatologia, Faculdade de Medicina da Universidade de São Paulo, São Paulo, São Paulo, Brazil; Instituto de Medicina Tropical de São Paulo, São Paulo, São Paulo, Brazil.
Instituto de Medicina Avançada · BRHospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo · BRInstituto de Infectologia Emílio Ribas · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe polymorphisms of IL28B have been described as important in the pathogenesis of infections caused by some viruses. The aim of this research was to evaluate whether IL28B gene polymorphisms (SNP rs8099917 and SNP rs12979860) are associated with HAM/TSP.

methodsThe study included 229 subjects, classified according to their neurological status in two groups: Group I (136 asymptomatic HTLV-1 carriers) and Group II (93 HAM/TSP patients). The proviral loads were quantified, and the rs8099917 and rs12979860 SNPs in the region of IL28B-gene were analyzed by StepOnePlus Real-time PCR System.

resultsA multivariate model analysis, including gender, age, and HTLV-1 DNA proviral load, showed that IL28B polymorphisms were independently associated with HAM/TSP outcome in rs12979860 genotype CT (OR = 2.03; IC95% = 0.96-4.27) and in rs8099917 genotype GG (OR = 7.61; IC95%  = 1.82-31.72).

conclusionSubjects with SNP rs8099917 genotype GG and rs12979618 genotype CT may present a distinct immune response against HTLV-1 infection. So, it seems reasonable to suggest that a search for IL28B polymorphisms should be performed for all HTLV-1-infected subjects in order to monitor their risk for disease development; however, since this is the first description of such finding in the literature, we should first replicate this study with more HTLV-1-infected persons to strengthen the evidence already provided by our results.

Indexed as

AdultAgedFemaleGenotypeHTLV-I InfectionsHumansHuman T-lymphotropic virus 1Interferon LambdaInterferonsInterleukinsMaleMiddle AgedParaparesis, Tropical SpasticPolymerase Chain ReactionPolymorphism, Single NucleotideProvirusesInterferon Lambdainterferon-lambda, humanInterferonsInterleukins

Identifiers

PMID25233462
PMCPMC4169378
OpenAlexW1979001780

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.