Evidence map›Paper›PMID 25232843›Full record

ArticlePLoS genetics2014

Widespread genome reorganization of an obligate virus mutualist.

Gaelen R Burke, Kimberly K O Walden, James B Whitfield, Hugh M Robertson, Michael R Strand

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
13.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 85 citations in OpenAlex.

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  9. Functional characterization ofJournal of virology · 2023
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  13. Whole-genome sequencing analysis and protocol for RNA interference of the endoparasitoid wasp Asobara japonica.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022
    Article
  14. The Complete Genome ofJournal of virology · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Gaelen R BurkeDepartment of Entomology, University of Georgia, Athens, Georgia, United States of America.
Kimberly K O WaldenDepartment of Entomology, University of Illinois, Urbana-Champaign, Champaign, Illinois, United States of America.
James B WhitfieldDepartment of Entomology, University of Illinois, Urbana-Champaign, Champaign, Illinois, United States of America.
Hugh M RobertsonDepartment of Entomology, University of Illinois, Urbana-Champaign, Champaign, Illinois, United States of America.
Michael R StrandDepartment of Entomology, University of Georgia, Athens, Georgia, United States of America.
University of Illinois Urbana-Champaign · USUniversity of Georgia · US

Funding

Purchase of a Thermo Fisher Scientific LTQ Orbitrap XL Mass SpectrometerS10RR028859 · NCRR · UNIVERSITY OF GEORGIA · PI AMSTER, I JONATHAN · 2011 to 2011
$832k
Functional analysis of a symbiotic polydnavirusF32AI096552 · NIAID · UNIVERSITY OF GEORGIA · PI BURKE, GAELEN R · 2012 to 2013
$98k
NCRR NIH HHS S10 RR028859NIAID NIH HHS F32 AI096552
6 · The paper itself

Abstract

The family Polydnaviridae is of interest because it provides the best example of viruses that have evolved a mutualistic association with their animal hosts. Polydnaviruses in the genus Bracovirus are strictly associated with parasitoid wasps in the family Braconidae, and evolved ∼100 million years ago from a nudivirus. Each wasp species relies on its associated bracovirus to parasitize hosts, while each bracovirus relies on its wasp for vertical transmission. Prior studies establish that bracovirus genomes consist of proviral segments and nudivirus-like replication genes, but how these components are organized in the genomes of wasps is unknown. Here, we sequenced the genome of the wasp Microplitis demolitor to characterize the proviral genome of M. demolitor bracovirus (MdBV). Unlike nudiviruses, bracoviruses produce virions that package multiple circular, double-stranded DNAs. DNA segments packaged into MdBV virions resided in eight dispersed loci in the M. demolitor genome. Each proviral segment was bounded by homologous motifs that guide processing to form mature viral DNAs. Rapid evolution of proviral segments obscured homology between other bracovirus-carrying wasps and MdBV. However, some domains flanking MdBV proviral loci were shared with other species. All MdBV genes previously identified to encode proteins required for replication were identified. Some of these genes resided in a multigene cluster but others, including subunits of the RNA polymerase that transcribes structural genes and integrases that process proviral segments, were widely dispersed in the M. demolitor genome. Overall, our results indicate that genome dispersal is a key feature in the evolution of bracoviruses into mutualists.

Indexed as

Genome, ViralGenomicsHost-Pathogen InteractionsMutationAmino Acid SequenceAnimalsConserved SequenceDNA, IntergenicFemaleGene DuplicationGenetic LinkageGenetic LociGenome, InsectHigh-Throughput Nucleotide SequencingMaleMolecular Sequence DataDNA, Intergenic

Identifiers

PMID25232843
PMCPMC4169385
OpenAlexW2039787869

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.