Evidence map›Paper›PMID 25232007›Full record

ArticleMolecular biology of the cell2014

TBC1D9B functions as a GTPase-activating protein for Rab11a in polarized MDCK cells.

Luciana I Gallo, Yong Liao, Wily G Ruiz, Dennis R Clayton, Min Li, Yong-Jian Liu, Yu Jiang, Mitsunori Fukuda, Gerard Apodaca, Xiao-Ming Yin

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
–field-weighted citation impact, top 82% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it, 3 citations in OpenAlex.

  1. Guideline
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  6. Restoration neurite growth by removing the blockage of endosome trafficking in Alzheimer-like mice.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2026
    Article
  7. Article
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  13. Small but mighty: Atg8s and Rabs in membrane dynamics during autophagy.Biochimica et biophysica acta. Molecular cell research · 2021
    Review
  14. Review
  15. LMTK1, a Novel Modulator of Endosomal Trafficking in Neurons.Frontiers in molecular neuroscience · 2020
    Article
  16. Journal of the American Society of Nephrology : JASN · 2019
    Article
  17. The LMTK1-TBC1D9B-Rab11A Cascade Regulates Dendritic Spine Formation via Endosome Trafficking.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2019
    Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Luciana I GalloDepartments of Medicine, University of Pittsburgh, Pittsburgh, PA 15261.
Yong LiaoPathology, University of Pittsburgh, Pittsburgh, PA 15261.
Wily G RuizDepartments of Medicine, University of Pittsburgh, Pittsburgh, PA 15261.
Dennis R ClaytonDepartments of Medicine, University of Pittsburgh, Pittsburgh, PA 15261.
Min LiPathology, University of Pittsburgh, Pittsburgh, PA 15261 Department of Pathology and Laboratory Medicine, Indiana University, Indianapolis, IN 46202.
Yong-Jian LiuNeurobiology, University of Pittsburgh, Pittsburgh, PA 15261.
Yu JiangPharmacology and Chemical Biology, University of Pittsburgh, Pittsburgh, PA 15261.
Mitsunori FukudaDepartment of Developmental Biology and Neurosciences, Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi 980-8578, Japan.
Gerard ApodacaDepartments of Medicine, University of Pittsburgh, Pittsburgh, PA 15261 Cell Biology, University of Pittsburgh, Pittsburgh, PA 15261 gla6@pitt.edu xmyin@iupui.edu.
Xiao-Ming YinPathology, University of Pittsburgh, Pittsburgh, PA 15261 Department of Pathology and Laboratory Medicine, Indiana University, Indianapolis, IN 46202.
University of Pittsburgh · USTohoku University · JP

Funding

Single Nephron and MetabolomicsP30DK079307 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KLEYMAN, THOMAS R · 2008 to 2022
$13.4M
Endocytic and Exocytic Traffic in Bladder UroepitheliumR37DK054425 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI APODACA, GERARD L · 2004 to 2013
$3.2M
Signal integration of the death receptor pathwaysR01CA083817 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI YIN, XIAO-MING · 2000 to 2010
$2.1M
The impact of growth modulation of liver carcinogenesisR01CA111456 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI YIN, XIAO-MING · 2005 to 2009
$1.4M
NCI NIH HHS R01 CA083817NCI NIH HHS R01 CA111456NCI NIH HHS R01-CA111456NCI NIH HHS R01-CA83817NIDDK NIH HHS P30 DK079307NIDDK NIH HHS P30-DK079307NIDDK NIH HHS R37 DK054425NIDDK NIH HHS R37-DK54425
6 · The paper itself

Abstract

Rab11a is a key modulator of vesicular trafficking processes, but there is limited information about the guanine nucleotide-exchange factors and GTPase-activating proteins (GAPs) that regulate its GTP-GDP cycle. We observed that in the presence of Mg(2+) (2.5 mM), TBC1D9B interacted via its Tre2-Bub2-Cdc16 (TBC) domain with Rab11a, Rab11b, and Rab4a in a nucleotide-dependent manner. However, only Rab11a was a substrate for TBC1D9B-stimulated GTP hydrolysis. At limiting Mg(2+) concentrations (<0.5 mM), Rab8a was an additional substrate for this GAP. In polarized Madin-Darby canine kidney cells, endogenous TBC1D9B colocalized with Rab11a-positive recycling endosomes but less so with EEA1-positive early endosomes, transferrin-positive recycling endosomes, or late endosomes. Overexpression of TBC1D9B, but not an inactive mutant, decreased the rate of basolateral-to-apical IgA transcytosis--a Rab11a-dependent pathway--and shRNA-mediated depletion of TBC1D9B increased the rate of this process. In contrast, TBC1D9B had no effect on two Rab11a-independent pathways--basolateral recycling of the transferrin receptor or degradation of the epidermal growth factor receptor. Finally, expression of TBC1D9B decreased the amount of active Rab11a in the cell and concomitantly disrupted the interaction between Rab11a and its effector, Sec15A. We conclude that TBC1D9B is a Rab11a GAP that regulates basolateral-to-apical transcytosis in polarized MDCK cells.

Indexed as

EndocytosisAnimalsCell PolarityDogsEndosomesGene Expression RegulationGTPase-Activating ProteinsHumansrab11 GTP-Binding Proteinsrab GTP-Binding ProteinsGTPase-Activating Proteinsrab11 GTP-Binding Proteinsrab GTP-Binding Proteins

Identifiers

PMID25232007
PMCPMC4230784
OpenAlexW2301239783

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.