Evidence map›Paper›PMID 25231992›Full record

ArticleThe Journal of biological chemistry2014

Structure and function of REP34 implicates carboxypeptidase activity in Francisella tularensis host cell invasion.

Geoffrey K Feld, Sahar El-Etr, Michele H Corzett, Mark S Hunter, Kamila Belhocine, Denise M Monack, Matthias Frank, Brent W Segelke, Amy Rasley

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Functional Annotation from Structural Homology.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Geoffrey K FeldBiosciences and Biotechnology and Lawrence Livermore National Laboratory, Livermore, California 94550.
Sahar El-EtrBiosciences and Biotechnology and Lawrence Livermore National Laboratory, Livermore, California 94550.
Michele H CorzettBiosciences and Biotechnology and Lawrence Livermore National Laboratory, Livermore, California 94550.
Mark S HunterPhysics Divisions, Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, California 94550 and.
Kamila BelhocineStanford University School of Medicine, Stanford, California 94305.
Denise M MonackStanford University School of Medicine, Stanford, California 94305.
Matthias FrankPhysics Divisions, Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, California 94550 and.
Brent W SegelkeBiosciences and Biotechnology and Lawrence Livermore National Laboratory, Livermore, California 94550.
Amy RasleyBiosciences and Biotechnology and Lawrence Livermore National Laboratory, Livermore, California 94550. Electronic address: rasley2@llnl.gov.

Funding

Vaccines and Diagnostics TrialsU54AI065359 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI BARBOUR, ALAN G. · 2005 to 2013
$88.8M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Y-FAMILY POLYMERASES AND CO-FACTORS IN TRANSLESION REPLICATIONP41RR015301 · NCRR · CORNELL UNIVERSITY ITHACA · PI EISENBERG, DAVID · 2001 to 2011
$28.2M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
NCI NIH HHS Y1-CO-1020NCRR NIH HHS 5P41RR015301-10NCRR NIH HHS P41 RR015301NIAID NIH HHS AI65359NIAID NIH HHS U54 AI065359NIGMS NIH HHS P41 GM103393NIGMS NIH HHS P41GM103393NIGMS NIH HHS P41 GM103403NIGMS NIH HHS Y1-GM-1104
6 · The paper itself

Abstract

Francisella tularensis is the etiological agent of tularemia, or rabbit fever. Although F. tularensis is a recognized biothreat agent with broad and expanding geographical range, its mechanism of infection and environmental persistence remain poorly understood. Previously, we identified seven F. tularensis proteins that induce a rapid encystment phenotype (REP) in the free-living amoeba, Acanthamoeba castellanii. Encystment is essential to the pathogen's long term intracellular survival in the amoeba. Here, we characterize the cellular and molecular function of REP34, a REP protein with a mass of 34 kDa. A REP34 knock-out strain of F. tularensis has a reduced ability to both induce encystment in A. castellanii and invade human macrophages. We determined the crystal structure of REP34 to 2.05-Å resolution and demonstrate robust carboxypeptidase B-like activity for the enzyme. REP34 is a zinc-containing monomeric protein with close structural homology to the metallocarboxypeptidase family of peptidases. REP34 possesses a novel topology and substrate binding pocket that deviates from the canonical funnelin structure of carboxypeptidases, putatively resulting in a catalytic role for a conserved tyrosine and distinct S1' recognition site. Taken together, these results identify REP34 as an active carboxypeptidase, implicate the enzyme as a potential key F. tularensis effector protein, and may help elucidate a mechanistic understanding of F. tularensis infection of phagocytic cells.

Indexed as

Amino Acid SequenceBacterial ProteinsCarboxypeptidasesCatalytic DomainCell LineFrancisella tularensisHost-Pathogen InteractionsHumansModels, MolecularMolecular Sequence DataMonocytesProtein Structure, SecondaryStructural Homology, ProteinX-Ray DiffractionBacterial ProteinsCarboxypeptidasesCarboxypeptidaseEnzyme StructureFrancisella tularensisPeptidaseVirulence FactorX-ray Crystallography

Identifiers

PMID25231992
PMCPMC4215245

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.