Evidence map›Paper›PMID 25230952›Full record

ArticleGenetics2014

Kinetochore biorientation in Saccharomyces cerevisiae requires a tightly folded conformation of the Ndc80 complex.

Jerry F Tien, Neil T Umbreit, Alex Zelter, Michael Riffle, Michael R Hoopmann, Richard S Johnson, Bryan R Fonslow, John R Yates, Michael J MacCoss, Robert L Moritz and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Effect of NDC80 in human hepatocellular carcinoma.World journal of gastroenterology · 2017
    Article
  6. Review
  7. Article
  8. Article
  9. Regulation of outer kinetochore Ndc80 complex-based microtubule attachments by the central kinetochore Mis12/MIND complex.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  10. Article
  11. MAPping the Ndc80 loop in cancer: A possible link between Ndc80/Hec1 overproduction and cancer formation.BioEssays : news and reviews in molecular, cellular and developmental biology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Jerry F TienDepartment of Biochemistry, University of Washington, Seattle, Washington 98195.
Neil T UmbreitDepartment of Biochemistry, University of Washington, Seattle, Washington 98195.
Alex ZelterDepartment of Biochemistry, University of Washington, Seattle, Washington 98195.
Michael RiffleDepartment of Biochemistry, University of Washington, Seattle, Washington 98195 Department of Genome Sciences, University of Washington, Seattle, Washington 98195.
Michael R HoopmannInstitute for Systems Biology, Seattle, Washington 98109.
Richard S JohnsonDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.
Bryan R FonslowDepartment of Chemical Physiology, The Scripps Research Institute, La Jolla, California 92037.
John R YatesDepartment of Chemical Physiology, The Scripps Research Institute, La Jolla, California 92037.
Michael J MacCossDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195.
Robert L MoritzInstitute for Systems Biology, Seattle, Washington 98109.
Charles L AsburyDepartment of Physiology and Biophysics, University of Washington, Seattle, Washington 98195.
Trisha N DavisDepartment of Biochemistry, University of Washington, Seattle, Washington 98195 tdavis@uw.edu.
University of Washington · USInstitute for Systems Biology · USScripps Research Institute · US

Funding

Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI BALIGA, NITIN S · 2006 to 2016
$30.6M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
MOLECULAR ANALYSIS OF THE SPINDLE POLE BODYR01GM040506 · NIGMS · UNIVERSITY OF WASHINGTON · PI DAVIS, TRISHA N. · 1988 to 2018
$8.6M
Shortening the development cycle time of Trans Proteomic Pipeline tools with high performance computingR01GM087221 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI DEUTSCH, ERIC, MORITZ, ROBERT L · 2010 to 2021
$6.0M
Supplement to Biophysical Study of Reconstituted Kinetochore-microtubule AttachmentsR01GM079373 · NIGMS · UNIVERSITY OF WASHINGTON · PI ASBURY, CHARLES · 2006 to 2019
$4.5M
FAIMS-Selected Reaction Monitoring to Quantitative Protein Networks in DiseaseS10RR027584 · NCRR · INSTITUTE FOR SYSTEMS BIOLOGY · PI MORITZ, ROBERT L · 2011 to 2011
$576k
Multicolor TIRF microscope for studying mitotic spindle components at the singleS10RR026406 · NCRR · UNIVERSITY OF WASHINGTON · PI ASBURY, CHARLES · 2010 to 2010
$214k
NCRR NIH HHS S10 RR026406NCRR NIH HHS S10 RR027584NCRR NIH HHS S10RR027584NCRR NIH HHS S10 RR26406NIGMS NIH HHS 2P50 GM076547NIGMS NIH HHS GM087221NIGMS NIH HHS P41 GM103533NIGMS NIH HHS P50 GM076547NIGMS NIH HHS R01 GM040506NIGMS NIH HHS R01 GM079373NIGMS NIH HHS R01 GM087221NIGMS NIH HHS T32 GM008268
6 · The paper itself

Abstract

Accurate transmission of genetic material relies on the coupling of chromosomes to spindle microtubules by kinetochores. These linkages are regulated by the conserved Aurora B/Ipl1 kinase to ensure that sister chromatids are properly attached to spindle microtubules. Kinetochore-microtubule attachments require the essential Ndc80 complex, which contains two globular ends linked by large coiled-coil domains. In this study, we isolated a novel ndc80 mutant in Saccharomyces cerevisiae that contains mutations in the coiled-coil domain. This ndc80 mutant accumulates erroneous kinetochore-microtubule attachments, resulting in misalignment of kinetochores on the mitotic spindle. Genetic analyses with suppressors of the ndc80 mutant and in vitro cross-linking experiments suggest that the kinetochore misalignment in vivo stems from a defect in the ability of the Ndc80 complex to stably fold at a hinge in the coiled coil. Previous studies proposed that the Ndc80 complex can exist in multiple conformations: elongated during metaphase and bent during anaphase. However, the distinct functions of individual conformations in vivo are unknown. Here, our analysis revealed a tightly folded conformation of the Ndc80 complex that is likely required early in mitosis. This conformation is mediated by a direct, intracomplex interaction and involves a greater degree of folding than the bent form of the complex at anaphase. Furthermore, our results suggest that this conformation is functionally important in vivo for efficient error correction by Aurora B/Ipl1 and, consequently, to ensure proper kinetochore alignment early in mitosis.

Indexed as

AllelesAmino Acid SequenceAmino Acid SubstitutionCell Cycle CheckpointsKinetochoresMicrotubulesMitosisModels, BiologicalMolecular Sequence DataMutationNuclear ProteinsProtein BindingProtein ConformationProtein FoldingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsNDC80 protein, S cerevisiaeNuclear ProteinsSaccharomyces cerevisiae ProteinsHec1linker scanningmass spectrometryoptical trapsyntelic

Identifiers

PMID25230952
PMCPMC4256767
OpenAlexW2113402551

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.