Evidence map›Paper›PMID 25229146›Full record

ArticleBiophysical journal2014

A cholesterol recognition motif in human phospholipid scramblase 1.

Itziar M D Posada, Jacques Fantini, F Xabier Contreras, Francisco Barrantes, Alicia Alonso, Félix M Goñi

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Itziar M D PosadaUnidad de Biofísica (CSIC, UPV/EHU), Departamento de Bioquímica y Biología Molecular, Bilbao, Spain.
Jacques FantiniInteractions Moléculaires et Systèmes Membranaires, EA-4674, Aix-Marseille Université, Marseille, France.
F Xabier ContrerasUnidad de Biofísica (CSIC, UPV/EHU), Departamento de Bioquímica y Biología Molecular, Bilbao, Spain; IKERBASQUE, Basque Foundation for Science, Bilbao, Spain.
Francisco BarrantesLaboratory of Molecular Neurobiology, Faculty of Medical Sciences, Biomedical Research Institute (BIOMED) UCA-CONICET, Catholic University of Argentina, Buenos Aires, Argentina.
Alicia AlonsoUnidad de Biofísica (CSIC, UPV/EHU), Departamento de Bioquímica y Biología Molecular, Bilbao, Spain.
Félix M GoñiUnidad de Biofísica (CSIC, UPV/EHU), Departamento de Bioquímica y Biología Molecular, Bilbao, Spain. Electronic address: felix.goni@ehu.es.
Aix-Marseille Université · FRConsejo Nacional de Investigaciones Científicas y Técnicas · ARIkerbasque · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human phospholipid scramblase 1 (SCR) catalyzes phospholipid transmembrane (flip-flop) motion. This protein is assumed to bind the membrane hydrophobic core through a transmembrane domain (TMD) as well as via covalently bound palmitoyl residues. Here, we explore the possible interaction of the SCR TMD with cholesterol by using a variety of experimental and computational biophysical approaches. Our findings indicate that SCR contains an amino acid segment at the C-terminal region that shows a remarkable affinity for cholesterol, although it lacks the CRAC sequence. Other 3-OH sterols, but not steroids lacking the 3-OH group, also bind this region of the protein. The newly identified cholesterol-binding region is located partly at the C-terminal portion of the TMD and partly in the first amino acid residues in the SCR C-terminal extracellular coil. This finding could be related to the previously described affinity of SCR for cholesterol-rich domains in membranes.

Indexed as

Amino Acid MotifsAmino Acid SequenceBiological TransportCell MembraneCholesterolComputer SimulationHumansHydrophobic and Hydrophilic InteractionsLipid BilayersModels, MolecularMolecular Sequence DataPeptide FragmentsPhospholipid Transfer ProteinsProtein BindingProtein Structure, TertiaryCholesterolLipid BilayersPeptide FragmentsPhospholipid Transfer ProteinsPLSCR1 protein, human

Identifiers

PMID25229146
PMCPMC4167295
OpenAlexW1989622348

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.