Evidence map›Paper›PMID 25228697›Full record

ArticleThe Journal of biological chemistry2014

Inhibition of F1-ATPase rotational catalysis by the carboxyl-terminal domain of the ϵ subunit.

Mayumi Nakanishi-Matsui, Mizuki Sekiya, Shio Yano, Masamitsu Futai

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. The regulatory subunit ε in Escherichia coli FBiochimica et biophysica acta. Bioenergetics · 2018
    Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Mayumi Nakanishi-MatsuiDepartment of Biochemistry, Faculty of Pharmaceutical Sciences, Iwate Medical University, Nishitokuta 2-1-1, Yahaba, Iwate 028-3694, Japan. Electronic address: nakanim@iwate-med.ac.jp.
Mizuki SekiyaDepartment of Biochemistry, Faculty of Pharmaceutical Sciences, Iwate Medical University, Nishitokuta 2-1-1, Yahaba, Iwate 028-3694, Japan.
Shio YanoDepartment of Biochemistry, Faculty of Pharmaceutical Sciences, Iwate Medical University, Nishitokuta 2-1-1, Yahaba, Iwate 028-3694, Japan.
Masamitsu FutaiDepartment of Biochemistry, Faculty of Pharmaceutical Sciences, Iwate Medical University, Nishitokuta 2-1-1, Yahaba, Iwate 028-3694, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Escherichia coli ATP synthase (F0F1) couples catalysis and proton transport through subunit rotation. The ϵ subunit, an endogenous inhibitor, lowers F1-ATPase activity by decreasing the rotation speed and extending the duration of the inhibited state (Sekiya, M., Hosokawa, H., Nakanishi-Matsui, M., Al-Shawi, M. K., Nakamoto, R. K., and Futai, M. (2010) Single molecule behavior of inhibited and active states of Escherichia coli ATP synthase F1 rotation. J. Biol. Chem. 285, 42058-42067). In this study, we constructed a series of ϵ subunits truncated successively from the carboxyl-terminal domain (helix 1/loop 2/helix 2) and examined their effects on rotational catalysis (ATPase activity, average rotation rate, and duration of inhibited state). As expected, the ϵ subunit lacking helix 2 caused about ½-fold reduced inhibition, and that without loop 2/helix 2 or helix 1/loop 2/helix 2 showed a further reduced effect. Substitution of ϵSer(108) in loop 2 and ϵTyr(114) in helix 2, which possibly interact with the β and γ subunits, respectively, decreased the inhibitory effect. These results suggest that the carboxyl-terminal domain of the ϵ subunit plays a pivotal role in the inhibition of F1 rotation through interaction with other subunits.

Indexed as

Adenosine TriphosphateAmino Acid MotifsAmino Acid SubstitutionBiocatalysisEscherichia coli ProteinsKineticsModels, MolecularProtein Structure, QuaternaryProtein SubunitsProton-Translocating ATPasesSequence DeletionAdenosine TriphosphateEscherichia coli ProteinsF0F1-ATPase epsilon subunit, E coliProtein SubunitsProton-Translocating ATPasesATPaseATP SynthaseBioenergyCarboxyl-terminal DomainEscherichia coli (E. coli)F1-ATPaseProtein StructureRotational CatalysisSingle-particle Analysisϵ Subunit

Identifiers

PMID25228697
PMCPMC4215258

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.