Evidence map›Paper›PMID 25228468›Full record

ArticleNucleic acids research2014

Replication of alpha-satellite DNA arrays in endogenous human centromeric regions and in human artificial chromosome.

Indri Erliandri, Haiqing Fu, Megumi Nakano, Jung-Hyun Kim, Karen H Miga, Mikhail Liskovykh, William C Earnshaw, Hiroshi Masumoto, Natalay Kouprina, Mirit I Aladjem and 1 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

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  9. Review
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  11. Review
  12. Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time.International journal of molecular sciences · 2021
    Review
  13. Review
  14. Article
  15. Review
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Indri ErliandriDevelopmental Therapeutics Branch, National Cancer Institute, National Institute of Health, Bethesda, MD, 20892, USA.
Haiqing FuDevelopmental Therapeutics Branch, National Cancer Institute, National Institute of Health, Bethesda, MD, 20892, USA.
Megumi NakanoLaboratory of Cell Engineering, Department of Frontier Research, Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0818, Japan.
Jung-Hyun KimDevelopmental Therapeutics Branch, National Cancer Institute, National Institute of Health, Bethesda, MD, 20892, USA.
Karen H MigaCenter for Biomolecular Science and Engineering, University of California, Santa Cruz, CA, 95064, USA.
Mikhail LiskovykhDevelopmental Therapeutics Branch, National Cancer Institute, National Institute of Health, Bethesda, MD, 20892, USA.
William C EarnshawWellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh, EH9 3JR, UK.
Hiroshi MasumotoLaboratory of Cell Engineering, Department of Frontier Research, Kazusa DNA Research Institute, Kisarazu, Chiba, 292-0818, Japan.
Natalay KouprinaDevelopmental Therapeutics Branch, National Cancer Institute, National Institute of Health, Bethesda, MD, 20892, USA kouprinn@mail.nih.gov.
Mirit I AladjemDevelopmental Therapeutics Branch, National Cancer Institute, National Institute of Health, Bethesda, MD, 20892, USA.
Vladimir LarionovDevelopmental Therapeutics Branch, National Cancer Institute, National Institute of Health, Bethesda, MD, 20892, USA.

Funding

Initiation of DNA Replication in Mammalian CellsZIABC010411 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ALADJEM, MIRIT · 2009 to 2025
$25.0M
Intramural NIH HHSWellcome Trust 073915Wellcome Trust 092076
6 · The paper itself

Abstract

In human chromosomes, centromeric regions comprise megabase-size arrays of 171 bp alpha-satellite DNA monomers. The large distances spanned by these arrays preclude their replication from external sites and imply that the repetitive monomers contain replication origins. However, replication within these arrays has not previously been profiled and the role of alpha-satellite DNA in initiation of DNA replication has not yet been demonstrated. Here, replication of alpha-satellite DNA in endogenous human centromeric regions and in de novo formed Human Artificial Chromosome (HAC) was analyzed. We showed that alpha-satellite monomers could function as origins of DNA replication and that replication of alphoid arrays organized into centrochromatin occurred earlier than those organized into heterochromatin. The distribution of inter-origin distances within centromeric alphoid arrays was comparable to the distribution of inter-origin distances on randomly selected non-centromeric chromosomal regions. Depletion of CENP-B, a kinetochore protein that binds directly to a 17 bp CENP-B box motif common to alpha-satellite DNA, resulted in enrichment of alpha-satellite sequences for proteins of the ORC complex, suggesting that CENP-B may have a role in regulating the replication of centromeric regions. Mapping of replication initiation sites in the HAC revealed that replication preferentially initiated in transcriptionally active regions.

Indexed as

CentromereChromosomes, Artificial, HumanDNA ReplicationCell LineCell Line, TumorCentromere Protein BDNA Replication TimingDNA, SatelliteHumansIndicators and ReagentsReplication OriginCentromere Protein BDNA, SatelliteIndicators and Reagents

Identifiers

PMID25228468
PMCPMC4191410

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.