Evidence map›Paper›PMID 25228343›Full record

ArticleThe Plant cell2014

Structural basis for the oligomerization of the MADS domain transcription factor SEPALLATA3 in Arabidopsis.

Sriharsha Puranik, Samira Acajjaoui, Simon Conn, Luca Costa, Vanessa Conn, Anthony Vial, Romain Marcellin, Rainer Melzer, Elizabeth Brown, Darren Hart and 6 more

Abstract read
In one paragraph

Article in The Plant cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Article
  2. Alphafuser: a parsimonious approach to predicting higher-order protein complexes.Acta crystallographica. Section D, Structural biology · 2026
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  5. Review
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  8. Identification, expression analyses ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2025
    Article
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  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Sriharsha PuranikEuropean Synchrotron Radiation Facility, Structural Biology Group, 38042 Grenoble, France.
Samira AcajjaouiEuropean Synchrotron Radiation Facility, Structural Biology Group, 38042 Grenoble, France.
Simon ConnCentre for Cancer Biology, SA Pathology and the University of South Australia, Adelaide SA 5000, Australia.
Luca CostaEuropean Synchrotron Radiation Facility, Structural Biology Group, 38042 Grenoble, France.
Vanessa ConnCentre for Cancer Biology, SA Pathology and the University of South Australia, Adelaide SA 5000, Australia.
Anthony VialEuropean Synchrotron Radiation Facility, Structural Biology Group, 38042 Grenoble, France.
Romain MarcellinEuropean Synchrotron Radiation Facility, Structural Biology Group, 38042 Grenoble, France Faculté des Sciences de Montpellier, place Eugène Bataillon, 34095 Montpellier, France.
Rainer MelzerDepartment of Genetics, Friedrich Schiller University, 07737 Jena, Germany.
Elizabeth BrownEuropean Synchrotron Radiation Facility, Structural Biology Group, 38042 Grenoble, France.
Darren HartUniversité Grenoble Alpes, CNRS, Integrated Structural Biology Grenoble, Unit of Virus Host Cell Interactions, Unité Mixte Internationale 3265 (CNRS-EMBL-UJF), UMS 3518 (CNRS-CEA-UJF-EMBL), 38042 Grenoble, France.
Günter TheißenDepartment of Genetics, Friedrich Schiller University, 07737 Jena, Germany.
Catarina S SilvaCNRS, Laboratoire de Physiologie Cellulaire and Végétale, UMR 5168, 38054 Grenoble, France Université Grenoble Alpes, Laboratoire de Physiologie Cellulaire et Végétale, F-38054 Grenoble, France Commissariat à l'Energie Atomique, Direction des Sciences du Vivant, Institut de Recherches en Technologies et Sciences pour le Vivant, Laboratoire de Physiologie Cellulaire et Végétale, F-38054 Grenoble, France INRA, Laboratoire de Physiologie Cellulaire et Végétale, USC1359, F-38054 Grenoble, France.
François ParcyCNRS, Laboratoire de Physiologie Cellulaire and Végétale, UMR 5168, 38054 Grenoble, France Université Grenoble Alpes, Laboratoire de Physiologie Cellulaire et Végétale, F-38054 Grenoble, France Commissariat à l'Energie Atomique, Direction des Sciences du Vivant, Institut de Recherches en Technologies et Sciences pour le Vivant, Laboratoire de Physiologie Cellulaire et Végétale, F-38054 Grenoble, France INRA, Laboratoire de Physiologie Cellulaire et Végétale, USC1359, F-38054 Grenoble, France.
Renaud DumasCNRS, Laboratoire de Physiologie Cellulaire and Végétale, UMR 5168, 38054 Grenoble, France Université Grenoble Alpes, Laboratoire de Physiologie Cellulaire et Végétale, F-38054 Grenoble, France Commissariat à l'Energie Atomique, Direction des Sciences du Vivant, Institut de Recherches en Technologies et Sciences pour le Vivant, Laboratoire de Physiologie Cellulaire et Végétale, F-38054 Grenoble, France INRA, Laboratoire de Physiologie Cellulaire et Végétale, USC1359, F-38054 Grenoble, France.
Max NanaoEuropean Molecular Biology Laboratory, Grenoble Outstation, 38042 Grenoble, France Unit for Virus Host-Cell Interactions, Université Grenoble Alpes-EMBL-CNRS, 38042 Grenoble, France.
Chloe ZubietaCNRS, Laboratoire de Physiologie Cellulaire and Végétale, UMR 5168, 38054 Grenoble, France Université Grenoble Alpes, Laboratoire de Physiologie Cellulaire et Végétale, F-38054 Grenoble, France Commissariat à l'Energie Atomique, Direction des Sciences du Vivant, Institut de Recherches en Technologies et Sciences pour le Vivant, Laboratoire de Physiologie Cellulaire et Végétale, F-38054 Grenoble, France INRA, Laboratoire de Physiologie Cellulaire et Végétale, USC1359, F-38054 Grenoble, France chloe.zubieta@cea.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In plants, MADS domain transcription factors act as central regulators of diverse developmental pathways. In Arabidopsis thaliana, one of the most central members of this family is SEPALLATA3 (SEP3), which is involved in many aspects of plant reproduction, including floral meristem and floral organ development. SEP3 has been shown to form homo and heterooligomeric complexes with other MADS domain transcription factors through its intervening (I) and keratin-like (K) domains. SEP3 function depends on its ability to form specific protein-protein complexes; however, the atomic level determinants of oligomerization are poorly understood. Here, we report the 2.5-Å crystal structure of a small portion of the intervening and the complete keratin-like domain of SEP3. The domains form two amphipathic alpha helices separated by a rigid kink, which prevents intramolecular association and presents separate dimerization and tetramerization interfaces comprising predominantly hydrophobic patches. Mutations to the tetramerization interface demonstrate the importance of highly conserved hydrophobic residues for tetramer stability. Atomic force microscopy was used to show SEP3-DNA interactions and the role of oligomerization in DNA binding and conformation. Based on these data, the oligomerization patterns of the larger family of MADS domain transcription factors can be predicted and manipulated based on the primary sequence.

Indexed as

Protein MultimerizationAmino Acid SequenceArabidopsisArabidopsis ProteinsChromatography, GelCrystallography, X-RayDNA, PlantHomeodomain ProteinsMADS Domain ProteinsMicroscopy, Atomic ForceModels, MolecularMolecular Sequence DataMutant ProteinsPromoter Regions, GeneticProtein BindingProtein Structure, TertiaryArabidopsis ProteinsDNA, PlantHomeodomain ProteinsMADS Domain ProteinsMutant ProteinsSEP3 protein, ArabidopsisTranscription Factors

Identifiers

PMID25228343
PMCPMC4213154

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.