Evidence map›Paper›PMID 25228340›Full record

ArticleThe Plant cell2014

A root-expressed L-phenylalanine:4-hydroxyphenylpyruvate aminotransferase is required for tropane alkaloid biosynthesis in Atropa belladonna.

Matthew A Bedewitz, Elsa Góngora-Castillo, Joseph B Uebler, Eliana Gonzales-Vigil, Krystle E Wiegert-Rininger, Kevin L Childs, John P Hamilton, Brieanne Vaillancourt, Yun-Soo Yeo, Joseph Chappell and 4 more

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 77 citations in OpenAlex.

  1. Review
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  13. Alkaloids of the GenusMolecules (Basel, Switzerland) · 2021
    Review
  14. Cell Suspensions ofMolecules (Basel, Switzerland) · 2019
    Article
  15. Article
  16. Article
  17. Review
  18. Metabolic Characterization ofFrontiers in plant science · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Matthew A BedewitzDepartment of Horticulture, Michigan State University, East Lansing, Michigan 48824.
Elsa Góngora-CastilloDepartment of Plant Biology, Michigan State University, East Lansing, Michigan 48824.
Joseph B UeblerDepartment of Horticulture, Michigan State University, East Lansing, Michigan 48824.
Eliana Gonzales-VigilDepartment of Horticulture, Michigan State University, East Lansing, Michigan 48824.
Krystle E Wiegert-RiningerDepartment of Horticulture, Michigan State University, East Lansing, Michigan 48824.
Kevin L ChildsDepartment of Plant Biology, Michigan State University, East Lansing, Michigan 48824.
John P HamiltonDepartment of Plant Biology, Michigan State University, East Lansing, Michigan 48824.
Brieanne VaillancourtDepartment of Plant Biology, Michigan State University, East Lansing, Michigan 48824.
Yun-Soo YeoPlant Biology Program and Department of Pharmaceutical Sciences, University of Kentucky, Lexington, Kentucky 40546.
Joseph ChappellPlant Biology Program and Department of Pharmaceutical Sciences, University of Kentucky, Lexington, Kentucky 40546.
Dean DellaPennaDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824.
A Daniel JonesDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824 Department of Chemistry, Michigan State University, East Lansing, Michigan 48824.
C Robin BuellDepartment of Plant Biology, Michigan State University, East Lansing, Michigan 48824.
Cornelius S BarryDepartment of Horticulture, Michigan State University, East Lansing, Michigan 48824 barrycs@msu.edu.
Michigan State University · USUniversity of Kentucky · US

Funding

Advancing Drug Development from Medicinal Plants using Transcriptomics and MetaboRC2GM092521 · NIGMS · UNIVERSITY OF KENTUCKY · PI CHAPPELL, JOE, DELLAPENNA, DEAN · 2009 to 2010
$6.0M
NIGMS NIH HHS 1RC2GM092521NIGMS NIH HHS RC2 GM092521
6 · The paper itself

Abstract

The tropane alkaloids, hyoscyamine and scopolamine, are medicinal compounds that are the active components of several therapeutics. Hyoscyamine and scopolamine are synthesized in the roots of specific genera of the Solanaceae in a multistep pathway that is only partially elucidated. To facilitate greater understanding of tropane alkaloid biosynthesis, a de novo transcriptome assembly was developed for Deadly Nightshade (Atropa belladonna). Littorine is a key intermediate in hyoscyamine and scopolamine biosynthesis that is produced by the condensation of tropine and phenyllactic acid. Phenyllactic acid is derived from phenylalanine via its transamination to phenylpyruvate, and mining of the transcriptome identified a phylogenetically distinct aromatic amino acid aminotransferase (ArAT), designated Ab-ArAT4, that is coexpressed with known tropane alkaloid biosynthesis genes in the roots of A. belladonna. Silencing of Ab-ArAT4 disrupted synthesis of hyoscyamine and scopolamine through reduction of phenyllactic acid levels. Recombinant Ab-ArAT4 preferentially catalyzes the first step in phenyllactic acid synthesis, the transamination of phenylalanine to phenylpyruvate. However, rather than utilizing the typical keto-acid cosubstrates, 2-oxoglutarate, pyruvate, and oxaloacetate, Ab-ArAT4 possesses strong substrate preference and highest activity with the aromatic keto-acid, 4-hydroxyphenylpyruvate. Thus, Ab-ArAT4 operates at the interface between primary and specialized metabolism, contributing to both tropane alkaloid biosynthesis and the direct conversion of phenylalanine to tyrosine.

Indexed as

Biosynthetic PathwaysAtropa belladonnaComputer SimulationGene Expression Regulation, PlantGene SilencingKineticsMolecular Sequence AnnotationMolecular Sequence DataMultigene FamilyPhenylalaninePhenylpyruvic AcidsPhylogenyPlant RootsRNA, MessengerSequence Analysis, RNATransaminases4-hydroxyphenylpyruvic acidaromatic amino acid aminotransferasePhenylalaninePhenylpyruvic AcidsRNA, MessengerTransaminasesTropanes

Identifiers

PMID25228340
PMCPMC4213168
OpenAlexW2017331557

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.