Evidence map›Paper›PMID 25228304›Full record

ArticleJournal of medical genetics2014

De novo and rare inherited mutations implicate the transcriptional coregulator TCF20/SPBP in autism spectrum disorder.

Christian Babbs, Deborah Lloyd, Alistair T Pagnamenta, Stephen R F Twigg, Joanne Green, Simon J McGowan, Ghazala Mirza, Rebecca Naples, Vikram P Sharma, Emanuela V Volpi and 6 more

Open access · hybridAbstract readCase Reports
In one paragraph

Article in Journal of medical genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. A Boy with a Novel Variant inChildren (Basel, Switzerland) · 2025
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  15. Review
  16. Disruption of MeCP2-TCF20 complex underlies distinct neurodevelopmental disorders.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  17. Article
  18. Article
  19. Variants in TCF20 in neurodevelopmental disability: description of 27 new patients and review of literature.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Christian BabbsWeatherall Institute of Molecular Medicine, John Radcliffe Hospital, Oxford, UK NIHR Biomedical Research Centre, Oxford, UK.
Deborah LloydWeatherall Institute of Molecular Medicine, John Radcliffe Hospital, Oxford, UK.
Alistair T PagnamentaNIHR Biomedical Research Centre, Oxford, UK Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Stephen R F TwiggWeatherall Institute of Molecular Medicine, John Radcliffe Hospital, Oxford, UK.
Joanne GreenWeatherall Institute of Molecular Medicine, John Radcliffe Hospital, Oxford, UK.
Simon J McGowanWeatherall Institute of Molecular Medicine, John Radcliffe Hospital, Oxford, UK.
Ghazala MirzaWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Rebecca NaplesWeatherall Institute of Molecular Medicine, John Radcliffe Hospital, Oxford, UK.
Vikram P SharmaWeatherall Institute of Molecular Medicine, John Radcliffe Hospital, Oxford, UK Craniofacial Unit, Department of Plastic and Reconstructive Surgery, Oxford University Hospitals NHS Trust, John Radcliffe Hospital, Oxford, UK.
Emanuela V VolpiWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Veronica J BuckleWeatherall Institute of Molecular Medicine, John Radcliffe Hospital, Oxford, UK.
Steven A WallCraniofacial Unit, Department of Plastic and Reconstructive Surgery, Oxford University Hospitals NHS Trust, John Radcliffe Hospital, Oxford, UK.
Samantha J L KnightNIHR Biomedical Research Centre, Oxford, UK Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
International Molecular Genetic Study of Autism Consortium (IMGSAC)
Jeremy R ParrInstitute of Neuroscience, Newcastle University, Newcastle Upon Tyne, UK.
Andrew O M WilkieWeatherall Institute of Molecular Medicine, John Radcliffe Hospital, Oxford, UK NIHR Biomedical Research Centre, Oxford, UK Craniofacial Unit, Department of Plastic and Reconstructive Surgery, Oxford University Hospitals NHS Trust, John Radcliffe Hospital, Oxford, UK.
John Radcliffe Hospital · GBUniversity of Oxford · GBCentre for Human Genetics · GBNewcastle University · GBOxford BioMedica (United Kingdom) · GB

Funding

Medical Research Council G1000801FMedical Research Council MC_UU_12009/1Wellcome Trust 078666Wellcome Trust 090532/Z/09/ZWellcome Trust 093329Wellcome Trust 102731/Z/13/Z
6 · The paper itself

Abstract

backgroundAutism spectrum disorders (ASDs) are common and have a strong genetic basis, yet the cause of ∼70-80% ASDs remains unknown. By clinical cytogenetic testing, we identified a family in which two brothers had ASD, mild intellectual disability and a chromosome 22 pericentric inversion, not detected in either parent, indicating de novo mutation with parental germinal mosaicism. We hypothesised that the rearrangement was causative of their ASD and localised the chromosome 22 breakpoints.

methodsThe rearrangement was characterised using fluorescence in situ hybridisation, Southern blotting, inverse PCR and dideoxy-sequencing. Open reading frames and intron/exon boundaries of the two physically disrupted genes identified, TCF20 and TNRC6B, were sequenced in 342 families (260 multiplex and 82 simplex) ascertained by the International Molecular Genetic Study of Autism Consortium (IMGSAC).

resultsIMGSAC family screening identified a de novo missense mutation of TCF20 in a single case and significant association of a different missense mutation of TCF20 with ASD in three further families. Through exome sequencing in another project, we independently identified a de novo frameshifting mutation of TCF20 in a woman with ASD and moderate intellectual disability. We did not identify a significant association of TNRC6B mutations with ASD.

conclusionsTCF20 encodes a transcriptional coregulator (also termed SPBP) that is structurally and functionally related to RAI1, the critical dosage-sensitive protein implicated in the behavioural phenotypes of the Smith-Magenis and Potocki-Lupski 17p11.2 deletion/duplication syndromes, in which ASD is frequently diagnosed. This study provides the first evidence that mutations in TCF20 are also associated with ASD.

Indexed as

ChildChild Development Disorders, PervasiveChromosome BreakpointsChromosomes, Human, Pair 22Gene RearrangementHumansInfantIn Situ Hybridization, FluorescenceMaleMutationSequence Analysis, DNATranscription FactorsTCF20 protein, humanTranscription FactorsChromosomalClinical geneticsGeneticsMolecular geneticsPsychiatry

Identifiers

PMID25228304
PMCPMC4215269
OpenAlexW2014834887

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.