Evidence map›Paper›PMID 25227463›Full record

ArticlemBio2014

Virus-mediated compartmentalization of the host translational machinery.

Emily A Desmet, Lynne J Anguish, John S L Parker

Open access · goldAbstract read
In one paragraph

Article in mBio, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 93 citations in OpenAlex.

  1. Article
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  13. The Formation and Function ofInternational journal of molecular sciences · 2023
    Review
  14. Article
  15. Review
  16. Article
  17. Ribosomal control in RNA virus-infected cells.Frontiers in microbiology · 2022
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Emily A DesmetBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, New York, USA.
Lynne J AnguishBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, New York, USA.
John S L ParkerBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, New York, USA jsp7@cornell.edu.
Cornell University · US

Funding

Studies of the global translational response to human virus infectionR21AI105520 · NIAID · CORNELL UNIVERSITY · PI PARKER, JOHN S, QIAN, SHU-BING · 2014 to 2015
$426k
Regulation of reovirus induced apoptosisR56AI090076 · NIAID · CORNELL UNIVERSITY · PI PARKER, JOHN S · 2012 to 2012
$408k
NIAID NIH HHS R21 AI105520NIAID NIH HHS R21AI105520NIAID NIH HHS R56 AI090076NIAID NIH HHS R56AI090076
6 · The paper itself

Abstract

unlabelledViruses require the host translational apparatus to synthesize viral proteins. Host stress response mechanisms that suppress translation, therefore, represent a significant obstacle that viruses must overcome. Here, we report a strategy whereby the mammalian orthoreoviruses compartmentalize the translational machinery within virus-induced inclusions known as viral factories (VF). VF are the sites of reovirus replication and assembly but were thought not to contain ribosomes. It was assumed viral mRNAs exited the VF to undergo translation by the cellular machinery, and proteins reentered the factory to participate in assembly. Here, we used ribopuromycylation to visualize active translation in infected cells. These studies revealed that active translation occurs within VF and that ribosomal subunits and proteins required for translation initiation, elongation, termination, and recycling localize to the factory. Interestingly, we observed components of the 43S preinitiation complex (PIC) concentrating primarily at factory margins, suggesting a spatial and/or dynamic organization of translation within the VF. Similarly, the viral single-stranded RNA binding protein σNS localized to the factory margins and had a tubulovesicular staining pattern that extended a short distance from the margins of the factories and colocalized with endoplasmic reticulum (ER) markers. Consistent with these colocalization studies, σNS was found to associate with both eukaryotic translation initiation factor 3 subunit A (eIF3A) and the ribosomal subunit pS6R. Together, these findings indicate that σNS functions to recruit 43S PIC machinery to the primary site of viral translation within the viral factory. Pathogen-mediated compartmentalization of the translational apparatus provides a novel mechanism by which viruses might avoid host translational suppression. IMPORTANCE: Viruses lack biosynthetic capabilities and depend upon the host for protein synthesis. This dependence requires viruses to evolve mechanisms to coerce the host translational machinery into synthesizing viral proteins in the face of ongoing cellular stress responses that suppress global protein synthesis. Reoviruses replicate and assemble within cytoplasmic inclusions called viral factories. However, synthesis of viral proteins was thought to occur in the cytosol. To identify the site(s) of viral translation, we undertook a microscopy-based approach using ribopuromycylation to detect active translation. Here, we report that active translation occurs within viral factories and that translational factors are compartmentalized within factories. Furthermore, we find that the reovirus nonstructural protein σNS associates with 43S preinitiation complexes at the factory margins, suggesting a role for σNS in translation. Together, virus-induced compartmentalization of the host translational machinery represents a strategy for viruses to spatiotemporally couple viral protein synthesis with viral replication and assembly.

Indexed as

Host-Pathogen InteractionsVirus ReplicationAnimalsCell LineChlorocebus aethiopsEndoplasmic ReticulumInclusion Bodies, ViralProtein BiosynthesisPuromycinReoviridaeRibosomal ProteinsRNA-Binding ProteinsRNA, MessengerRNA, ViralViral Nonstructural ProteinsPuromycinRibosomal ProteinsRNA-Binding ProteinsRNA, MessengerRNA, ViralViral Nonstructural Proteins

Identifiers

PMID25227463
PMCPMC4172071
OpenAlexW2019564765

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.