Evidence map›Paper›PMID 25225797›Full record

ArticlePloS one2014

The KDM2B- let-7b -EZH2 axis in myelodysplastic syndromes as a target for combined epigenetic therapy.

Ekapun Karoopongse, Cecilia Yeung, John Byon, Aravind Ramakrishnan, Zaneta J Holman, Peter Y Z Jiang, Qiang Yu, H Joachim Deeg, A Mario Marcondes

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Observational
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Ekapun KaroopongseClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Cecilia YeungClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America; Department of Anatomic Pathology, University of Washington, Seattle, Washington, United States of America.
John ByonDepartment of Hematology, University of Washington, Seattle, Washington, United States of America.
Aravind RamakrishnanClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America; Department of Medicine, University of Washington, Seattle, Washington, United States of America.
Zaneta J HolmanClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Peter Y Z JiangMedical Oncology, Providence Regional Cancer Partnership and the Everett Clinic, Everett, Washington, United States of America.
Qiang YuCancer Biology and Pharmacology, Genome Institute of Singapore, A*STAR (Agency for Science, Technology and Research), Biopolis, Singapore, China.
H Joachim DeegClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America; Department of Medicine, University of Washington, Seattle, Washington, United States of America.
A Mario MarcondesClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America; Department of Medicine, University of Washington, Seattle, Washington, United States of America.
Fred Hutch Cancer Center · USUniversity of Washington · USGenome Institute of Singapore · SGProvidence Regional Cancer Partnership · US

Funding

Transcriptional Control of Stroma Dependent Apoptosis in MDSK08DK085156 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MARCONDES, A. MARIO Q. · 2010 to 2014
$680k
NIDDK NIH HHS 1 K08 DK085156-01A1NIDDK NIH HHS K08 DK085156
6 · The paper itself

Abstract

Both DNA and histone methylation are dysregulated in the myelodysplastic syndromes (MDS). Based on preliminary data we hypothesized that dysregulated interactions of KDM2B, let-7b and EZH2 signals lead to an aberrant epigenetic landscape. Gene expression in CD34+ cells from MDS marrows was analyzed by NanoString miR array and validated by real-time polymerase chain reaction (PCR). The functions of KDM2B, let-7b and EZH2 were characterized in myeloid cell lines and in primary MDS cells. Let-7b levels were significantly higher, and KDM2B and EZH2 expression was lower in primary CD34+ MDS marrow cells (n = 44) than in healthy controls (n = 21; p<0.013, and p<0.0001, respectively). Overexpression of let-7b reduced EZH2 and KDM2B protein levels, and decreased cells in S-phase while increasing G0/G1 cells (p = 0.0005), accompanied by decreased H3K27me3 and cyclin D1. Silencing of KDM2B increased let-7b expression. Treatment with the cyclopentanyl analog of 3-deazaadenosine, DZNep, combined with the DNA hypomethylating agent 5-azacitidine, decreased levels of EZH2, suppressed methylation of di- and tri-methylated H3K27, and increased p16 expression, associated with cell proliferation. Thus, KDM2B, via let-7b/EZH2, promotes transcriptional repression. DZNep bypassed the inhibitory KDM2B/let-7b/EZH2 axis by preventing H3K27 methylation and reducing cell proliferation. DZNep might be able to enhance the therapeutic effects of DNA hypomethylating agents such as 5-azacitidine, currently considered standard therapy for patients with MDS.

Indexed as

Epigenesis, GeneticAzacitidineBone Marrow CellsCell Line, TumorCluster AnalysisEnhancer of Zeste Homolog 2 ProteinF-Box ProteinsGene ExpressionGene Expression ProfilingGene Knockdown TechniquesHistonesHumansJumonji Domain-Containing Histone DemethylasesMethylationMicroRNAsMolecular Targeted TherapyAzacitidineEnhancer of Zeste Homolog 2 ProteinEZH2 protein, humanF-Box ProteinsHistonesJumonji Domain-Containing Histone DemethylasesKDM2A protein, humanMicroRNAsmirnlet7 microRNA, humanPolycomb Repressive Complex 2

Identifiers

PMID25225797
PMCPMC4166605
OpenAlexW2049179199

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.