Evidence map›Paper›PMID 25225667›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2014

Regulation of the Th1 genomic locus from Ifng through Tmevpg1 by T-bet.

Sarah P Collier, Melodie A Henderson, John T Tossberg, Thomas M Aune

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 1 synthesis or guideline pooled it, 109 citations in OpenAlex.

  1. Pooled it
  2. TOX drives CD4Nature immunology · 2026
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20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sarah P CollierDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University School of Medicine, Nashville, TN 37232; and.
Melodie A HendersonDepartment of Medicine, Vanderbilt University School of Medicine, Nashville, TN 37232.
John T TossbergDepartment of Medicine, Vanderbilt University School of Medicine, Nashville, TN 37232.
Thomas M AuneDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University School of Medicine, Nashville, TN 37232; and Department of Medicine, Vanderbilt University School of Medicine, Nashville, TN 37232 tom.aune@vanderbilt.edu.
Vanderbilt University · US

Funding

IFN GAMMA GENE REGULATION IN T CELLS AND NK CELLSR01AI044924 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI AUNE, THOMAS M. · 2000 to 2019
$5.8M
Interdisciplinary Training in Rheumatic DiseasesT32AR059039 · NIAMS · VANDERBILT UNIVERSITY · PI Tracy Minan Frech, AMY S MAJOR · 2010 to 2026
$4.3M
NIAID NIH HHS R01 AI044924NIAMS NIH HHS T32 AR059039
6 · The paper itself

Abstract

Long noncoding RNAs (lncRNAs), critical regulators of protein-coding genes, are likely to be coexpressed with neighboring protein-coding genes in the genome. How the genome integrates signals to achieve coexpression of lncRNA genes and neighboring protein-coding genes is not well understood. The lncRNA Tmevpg1 (NeST, Ifng-AS1) is critical for Th1-lineage-specific expression of Ifng and is coexpressed with Ifng. In this study, we show that T-bet guides epigenetic remodeling of Tmevpg1 proximal and distal enhancers, leading to recruitment of stimulus-inducible transcription factors, NF-κB and Ets-1, to the locus. Activities of Tmevpg1-specific enhancers and Tmevpg1 transcription are dependent upon NF-κB. Thus, we propose that T-bet stimulates epigenetic remodeling of Tmevpg1-specific enhancers and Ifng-specific enhancers to achieve Th1-lineage-specific expression of Ifng.

Indexed as

Enhancer Elements, GeneticEpigenesis, GeneticAnimalsCell LineageGenetic LociInterferon-gammaMiceMice, Inbred BALB CProto-Oncogene Protein c-ets-1Regulatory Sequences, Nucleic AcidRNA, Long NoncodingT-bet Transcription FactorT-Box Domain ProteinsTh1 CellsTranscription Factor RelAEts1 protein, mouseInterferon-gammaProto-Oncogene Protein c-ets-1Rela protein, mouseRNA, Long NoncodingT-bet Transcription FactorT-Box Domain ProteinsTmevpg1 long noncoding RNA, mouseTranscription Factor RelA

Identifiers

PMID25225667
PMCPMC4185266
OpenAlexW1509892500

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.