Evidence map›Paper›PMID 25225332›Full record

ArticleMolecular and cellular biology2014

RNA binding and core complexes constitute the U-insertion/deletion editosome.

Inna Aphasizheva, Liye Zhang, Xiaorong Wang, Robyn M Kaake, Lan Huang, Stefano Monti, Ruslan Aphasizhev

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 72 citations in OpenAlex.

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  15. KRGG1 function in RNA editing inRNA (New York, N.Y.) · 2023
    Article
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5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Inna AphasizhevaDepartment of Molecular and Cell Biology, Boston University Goldman School of Dental Medicine, Boston, Massachusetts, USA.
Liye ZhangSection of Computational Biomedicine, Boston University School of Medicine, Boston, Massachusetts, USA.
Xiaorong WangDepartment of Physiology & Biophysics, School of Medicine, University of California, Irvine, Irvine, California, USA.
Robyn M KaakeDepartment of Physiology & Biophysics, School of Medicine, University of California, Irvine, Irvine, California, USA.
Lan HuangDepartment of Physiology & Biophysics, School of Medicine, University of California, Irvine, Irvine, California, USA.
Stefano MontiSection of Computational Biomedicine, Boston University School of Medicine, Boston, Massachusetts, USA.
Ruslan AphasizhevDepartment of Molecular and Cell Biology, Boston University Goldman School of Dental Medicine, Boston, Massachusetts, USA Department of Biochemistry, Boston University School of Medicine, Boston, Massachusetts, USA ruslana@bu.edu.
Boston University · USUniversity of California, Irvine · US

Funding

Biomedical Informatics Training ProgramT15LM007443 · NLM · UNIVERSITY OF CALIFORNIA-IRVINE · PI BALDI, PIERRE · 2002 to 2012
$9.3M
Proteomics of the Proteasome Interacting NetworksR01GM074830 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI HUANG, LAN · 2005 to 2022
$6.1M
Guide RNA Binding ComplexR01AI101057 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI Ruslan Afasizhev · 2012 to 2026
$6.0M
Structures and Functions of RNA Editing TUTasesR01AI091914 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI AFASIZHEV, RUSLAN · 2011 to 2020
$4.4M
Function and Regulation of the CSN in the NF-kB Activation PathwayR21CA161807 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI HUANG, LAN · 2012 to 2013
$358k
NCI NIH HHS R21 CA161807NCI NIH HHS R21CA161807NIAID NIH HHS R01 AI091914NIAID NIH HHS R01AI091914NIAID NIH HHS R01 AI101057NIAID NIH HHS R01AI101057NIGMS NIH HHS R01 GM074830NIGMS NIH HHS R01GM074830NLM NIH HHS 5T15LM007443-10NLM NIH HHS T15 LM007443
6 · The paper itself

Abstract

Enzymes embedded into the RNA editing core complex (RECC) catalyze the U-insertion/deletion editing cascade to generate open reading frames in trypanosomal mitochondrial mRNAs. The sequential reactions of mRNA cleavage, U-addition or removal, and ligation are directed by guide RNAs (gRNAs). We combined proteomic, genetic, and functional studies with sequencing of total and complex-bound RNAs to define a protein particle responsible for the recognition of gRNAs and pre-mRNA substrates, editing intermediates, and products. This approximately 23-polypeptide tripartite assembly, termed the RNA editing substrate binding complex (RESC), also functions as the interface between mRNA editing, polyadenylation, and translation. Furthermore, we found that gRNAs represent only a subset of small mitochondrial RNAs, and yet an inexplicably high fraction of them possess 3' U-tails, which correlates with gRNA's enrichment in the RESC. Although both gRNAs and mRNAs are associated with the RESC, their metabolic fates are distinct: gRNAs are degraded in an editing-dependent process, whereas edited mRNAs undergo 3' adenylation/uridylation prior to translation. Our results demonstrate that the well-characterized editing core complex (RECC) and the RNA binding particle defined in this study (RESC) typify enzymatic and substrate binding macromolecular constituents, respectively, of the ∼40S RNA editing holoenzyme, the editosome.

Indexed as

Base SequenceMitochondriaOpen Reading FramesPeptide Chain Elongation, TranslationalPolyadenylationProtozoan ProteinsRNARNA-Binding ProteinsRNA, CatalyticRNA EditingRNA, Guide, KinetoplastidaRNA InterferenceRNA, MessengerRNA, MitochondrialRNA, ProtozoanRNA, Small InterferingProtozoan ProteinsRNARNA-Binding ProteinsRNA, CatalyticRNA, Guide, KinetoplastidaRNA, MessengerRNA, MitochondrialRNA, ProtozoanRNA, Small Interfering

Identifiers

PMID25225332
PMCPMC4248751
OpenAlexW2101926477

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.