Evidence map›Paper›PMID 25225288›Full record

ArticleThe Journal of biological chemistry2014

Development of isoform-specific sensors of polypeptide GalNAc-transferase activity.

Lina Song, 丽娜 宋, Collin Bachert, Katrine T Schjoldager, Henrik Clausen, Adam D Linstedt

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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  10. Genetic glycoengineering in mammalian cells.The Journal of biological chemistry
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Lina SongDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213 and.
丽娜 宋Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213 and.
Collin BachertDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213 and.
Katrine T SchjoldagerDepartments of Cellular and Molecular Medicine and School of Dentistry, Copenhagen Center for Glycomics, University of Copenhagen, DK-2200 Copenhagen, Denmark.
Henrik ClausenDepartments of Cellular and Molecular Medicine and School of Dentistry, Copenhagen Center for Glycomics, University of Copenhagen, DK-2200 Copenhagen, Denmark.
Adam D LinstedtDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213 and. Electronic address: linstedt@cmu.edu.
Carnegie Mellon University · USUniversity of Copenhagen · DK

Funding

RETRIEVAL PATHWAY IN GOLGI STACK TARGETINGR01GM056779 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI LINSTEDT, ADAM D · 1998 to 2015
$4.1M
STRUCTURAL BASIS OF ORGANELLE TETHERINGR01GM095549 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI LINSTEDT, ADAM D · 2011 to 2014
$1.2M
DRUG-LIKE MODULATORS TARGETING O-GLYCOSYLATION BY GalNAc TRANSFERASE-2/3R21DE026714 · NIDCR · CARNEGIE-MELLON UNIVERSITY · PI LINSTEDT, ADAM D · 2016 to 2017
$584k
NIDCR NIH HHS R21 DE026714NIGMS NIH HHS GM056779NIGMS NIH HHS GM095549NIGMS NIH HHS R01 GM056779NIGMS NIH HHS R01 GM095549
6 · The paper itself

Abstract

Humans express up to 20 isoforms of GalNAc-transferase (herein T1-T20) that localize to the Golgi apparatus and initiate O-glycosylation. Regulation of this enzyme family affects a vast array of proteins transiting the secretory pathway and diseases arise upon misregulation of specific isoforms. Surprisingly, molecular probes to monitor GalNAc-transferase activity are lacking and there exist no effective global or isoform-specific inhibitors. Here we describe the development of T2- and T3-isoform specific fluorescence sensors that traffic in the secretory pathway. Each sensor yielded little signal when glycosylated but was strongly activated in the absence of its glycosylation. Specificity of each sensor was assessed in HEK cells with either the T2 or T3 enzymes deleted. Although the sensors are based on specific substrates of the T2 and T3 enzymes, elements in or near the enzyme recognition sequence influenced their activity and required modification, which we carried out based on previous in vitro work. Significantly, the modified T2 and T3 sensors were activated only in cells lacking their corresponding isozymes. Thus, we have developed T2- and T3-specific sensors that will be valuable in both the study of GalNAc-transferase regulation and in high-throughput screening for potential therapeutic regulators of specific GalNAc-transferases.

Indexed as

Protein Processing, Post-TranslationalAmino Acid SequenceAngiopoietin-Like Protein 3Angiopoietin-like ProteinsAngiopoietinsBiosensing TechniquesEnzyme InhibitorsFibroblast Growth Factor-23Fibroblast Growth FactorsFluorescent DyesGlycosylationHEK293 CellsHumansIsoenzymesMicroscopy, FluorescenceN-AcetylgalactosaminyltransferasesAngiopoietin-Like Protein 3Angiopoietin-like ProteinsAngiopoietinsANGPTL3 protein, humanEnzyme InhibitorsFibroblast Growth Factor-23Fibroblast Growth FactorsFluorescent DyesIsoenzymesN-AcetylgalactosaminyltransferasesPeptide FragmentsBiosensorFluorescenceGlycosylationGlycosyltransferaseGolgiProtein Processing

Identifiers

PMID25225288
PMCPMC4215235
OpenAlexW2070116980

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.