Evidence map›Paper›PMID 25225269›Full record

ArticleJournal of bacteriology2014

Methylamine utilization via the N-methylglutamate pathway in Methylobacterium extorquens PA1 involves a novel flow of carbon through C1 assimilation and dissimilation pathways.

Dipti D Nayak, Christopher J Marx

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  6. Microbial functional diversity across biogeochemical provinces in the central Pacific Ocean.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  7. Aerobic bacterial methane synthesis.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Article
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  11. Fermentative Production ofFrontiers in bioengineering and biotechnology · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Dipti D NayakOrganismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, USA.
Christopher J MarxOrganismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, USA Faculty of Arts and Sciences Center for Systems Biology, Harvard University, Cambridge, Massachusetts, USA Biological Sciences, University of Idaho, Moscow, Idaho, USA Institute for Bioinformatics and Evolutionary Studies, University of Idaho, Moscow, Idaho, USA cmarx@uidaho.edu.
Harvard University · US

Funding

Systems-level physiological basis of selection and epistasis in adaptationR01GM078209 · NIGMS · HARVARD UNIVERSITY · PI MARX, CHRISTOPHER J · 2007 to 2011
$1.7M
NIGMS NIH HHS GM078209NIGMS NIH HHS R01 GM078209
6 · The paper itself

Abstract

Methylotrophs grow on reduced single-carbon compounds like methylamine as the sole source of carbon and energy. In Methylobacterium extorquens AM1, the best-studied aerobic methylotroph, a periplasmic methylamine dehydrogenase that catalyzes the primary oxidation of methylamine to formaldehyde has been examined in great detail. However, recent metagenomic data from natural ecosystems are revealing the abundance and importance of lesser-known routes, such as the N-methylglutamate pathway, for methylamine oxidation. In this study, we used M. extorquens PA1, a strain that is closely related to M. extorquens AM1 but is lacking methylamine dehydrogenase, to dissect the genetics and physiology of the ecologically relevant N-methylglutamate pathway for methylamine oxidation. Phenotypic analyses of mutants with null mutations in genes encoding enzymes of the N-methylglutamate pathway suggested that γ-glutamylmethylamide synthetase is essential for growth on methylamine as a carbon source but not as a nitrogen source. Furthermore, analysis of M. extorquens PA1 mutants with defects in methylotrophy-specific dissimilatory and assimilatory modules suggested that methylamine use via the N-methylglutamate pathway requires the tetrahydromethanopterin (H4MPT)-dependent formaldehyde oxidation pathway but not a complete tetrahydrofolate (H4F)-dependent formate assimilation pathway. Additionally, we present genetic evidence that formaldehyde-activating enzyme (FAE) homologs might be involved in methylotrophy. Null mutants of FAE and homologs revealed that FAE and FAE2 influence the growth rate and FAE3 influences the yield during the growth of M. extorquens PA1 on methylamine.

Indexed as

Metabolic Flux AnalysisCarbonEnergy MetabolismGene DeletionGlutamatesMetabolic Networks and PathwaysMethylaminesMethylobacterium extorquensOxidation-ReductionCarbonGlutamatesmethylamineMethylaminesN-methylglutamate

Identifiers

PMID25225269
PMCPMC4248863
OpenAlexW2069917850

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.