Evidence map›Paper›PMID 25224652›Full record

ArticleChembiochem : a European journal of chemical biology2014

Reversible covalent inhibition of eEF-2K by carbonitriles.

Ashwini K Devkota, Ramakrishna Edupuganti, Chunli Yan, Yue Shi, Jiney Jose, Qiantao Wang, Tamer S Kaoud, Eun Jeong Cho, Pengyu Ren, Kevin N Dalby

Open access · greenAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 30 citations in OpenAlex.

  1. Advances in reversible covalent kinase inhibitors.Medicinal research reviews · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Ashwini K DevkotaTexas Screening Alliance for Cancer Therapeutics, The University of Texas at Austin, 105 E. 24th Street, Stop A5300, Austin, TX 78712 (USA).
Ramakrishna Edupuganti
Chunli Yan
Yue Shi
Jiney Jose
Qiantao Wang
Tamer S Kaoud
Eun Jeong Cho
Pengyu Ren
Kevin N Dalby
The University of Texas at Austin · US

Funding

DEVELOPMENT OF A NEXT-GENERATION NUCLEIC ACID FORCE FIELDR01GM106137 · NIGMS · WASHINGTON UNIVERSITY · PI JAY PONDER, Pengyu Ren · 2013 to 2026
$3.5M
Mechanism and Specificity of MAP KinasesR01GM059802 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI DALBY, KEVIN N · 2001 to 2011
$2.3M
Novel Therapeutics for Translation Control in Breast CancerR21CA167505 · NCI · UNIVERSITY OF TEXAS AT AUSTIN · PI DALBY, KEVIN N, OZPOLAT, BULENT · 2012 to 2013
$369k
NCI NIH HHS CA167505NCI NIH HHS R21 CA167505NIGMS NIH HHS GM059802NIGMS NIH HHS GM106137NIGMS NIH HHS R01 GM059802NIGMS NIH HHS R01 GM106137
6 · The paper itself

Abstract

eEF-2K is a potential target for treating cancer. However, potent specific inhibitors for this enzyme are lacking. Previously, we identified 2,6-diamino-4-(2-fluorophenyl)-4H-thiopyran-3,5-dicarbonitrile (DFTD) as an inhibitor of eEF-2K. Here we describe its mechanism of action against eEF-2K, on the basis of kinetic, mutational, and docking studies, and use chemoinformatic approaches to identify a similar class of carbonitrile-containing compounds that exhibit the same mechanism of action. We show that DFTD behaves as a reversible covalent inhibitor of eEF-2K with a two-step mechanism of inhibition: a fast initial binding step, followed by a slower reversible inactivation step. Molecular docking suggests that a nitrile group of DFTD binds within 4.5 Å of the active site Cys146 to form a reversible thioimidate adduct. Because Cys146 is not conserved amongst other related kinases, targeting this residue holds promise for the development of selective covalent inhibitors of eEF-2K.

Indexed as

Amino Acid SequenceBinding SitesCatalytic DomainElongation Factor 2 KinaseHumansKineticsMolecular Docking SimulationMolecular Sequence DataMutagenesis, Site-DirectedNitrilesRecombinant ProteinsSequence AlignmentElongation Factor 2 KinaseNitrilesRecombinant Proteinscancercovalent inhibitorsdrug discoveryeEF-2 kinasenitriles

Identifiers

PMID25224652
PMCPMC6482285
OpenAlexW2144908288

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.