Evidence map›Paper›PMID 25224413›Full record

ArticleBlood2014

TET2 mutations predict response to hypomethylating agents in myelodysplastic syndrome patients.

Rafael Bejar, Allegra Lord, Kristen Stevenson, Michal Bar-Natan, Albert Pérez-Ladaga, Jacques Zaneveld, Hui Wang, Bennett Caughey, Petar Stojanov, Gad Getz and 7 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Blood, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04602273 (Treatment of High Risk Myelodysplastic Syndromes), which is not on this map. Cited by 315 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
315citing papers in PubMed, 5 pooled it
39.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04602273 unknown statusnot on this mapstarted 2016, after this paper: background citation

Treatment of High Risk Myelodysplastic Syndromes (MDS) Not Candidates for Allogeneic Transplantation of Hematopoietic Progenitors (ALO-HSCT)

TypeobservationalSponsorGrupo Cooperativo de Estudio y Tratamiento de las Leucemias Agudas y MielodisplasiasRan2016 to 2021Enrolled150ConditionsMyelodysplastic SyndromesArmsAzacitidine Injection [Vidaza]
3 · Its place in the literature

Who cites it

315 citing papers in PubMed, 5 syntheses or guidelines pooled it, 548 citations in OpenAlex.

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  10. Phase III, Randomized, Placebo-Controlled Trial of CC-486 (Oral Azacitidine) in Patients With Lower-Risk Myelodysplastic Syndromes.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2021
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255 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 1 country.

Rafael BejarDivision of Hematology and Oncology, University of California San Diego Moores Cancer Center, La Jolla, CA;
Allegra LordDivision of Hematology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA;
Kristen StevensonDepartment of Biostatistics and Computational Biology and.
Michal Bar-NatanDepartment of Medical Oncology, Division of Hematological Malignancies, Dana-Farber Cancer Institute, Boston, MA;
Albert Pérez-LadagaDivision of Hematology and Oncology, University of California San Diego Moores Cancer Center, La Jolla, CA;
Jacques ZaneveldDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX;
Hui WangDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX;
Bennett CaugheyDivision of Hematology and Oncology, University of California San Diego Moores Cancer Center, La Jolla, CA;
Petar StojanovBroad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, MA; and.
Gad GetzBroad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, MA; and.
Guillermo Garcia-ManeroDepartment of Leukemia, University of Texas MD Anderson Cancer Center, Houston, TX.
Hagop KantarjianDepartment of Leukemia, University of Texas MD Anderson Cancer Center, Houston, TX.
Rui ChenDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX;
Richard M StoneDepartment of Medical Oncology, Division of Hematological Malignancies, Dana-Farber Cancer Institute, Boston, MA;
Donna NeubergDepartment of Biostatistics and Computational Biology and.
David P SteensmaDepartment of Medical Oncology, Division of Hematological Malignancies, Dana-Farber Cancer Institute, Boston, MA;
Benjamin L EbertDivision of Hematology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA; Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, MA; and.
Baylor College of Medicine · USDana-Farber Cancer Institute · USUniversity of California, San Diego · USHarvard University · USThe University of Texas MD Anderson Cancer Center · USBroad Institute · USMassachusetts Institute of Technology · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DIANE M SIMEONE · 1985 to 2026
$124.9M
Tyrosine Kinases, Serine-Threonine Kinases,&Phosophatases in PathogenesisP01CA108631 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI KORNBLAU, STEVEN M · 2005 to 2009
$9.7M
Functional Genomic Dissection of Refractory AnemiaR01HL082945 · NHLBI · DANA-FARBER CANCER INSTITUTE · PI EBERT, BENJAMIN LEVINE · 2005 to 2022
$6.8M
Characterization of Genetic Abnormalities in MDS and Their Clinical ImpactK08DK091360 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BEJAR, RAFAEL · 2012 to 2016
$789k
NCI NIH HHS CA016672NCI NIH HHS P01 CA108631NCI NIH HHS P01CA108631NCI NIH HHS P30 CA016672NCI NIH HHS P30 CA023100NHLBI NIH HHS R01 HL082945NHLBI NIH HHS R01HL082945NIDDK NIH HHS K08 DK091360NIDDK NIH HHS K08DK091360
6 · The paper itself

Abstract

Only a minority of myelodysplastic syndrome (MDS) patients respond to hypomethylating agents (HMAs), but strong predictors of response are unknown. We sequenced 40 recurrently mutated myeloid malignancy genes in tumor DNA from 213 MDS patients collected before treatment with azacitidine (AZA) or decitabine (DEC). Mutations were examined for association with response and overall survival. The overall response rate of 47% was not different between agents. Clonal TET2 mutations predicted response (odds ratio [OR] 1.99, P = .036) when subclones unlikely to be detected by Sanger sequencing (allele fraction <10%) were treated as wild-type (WT). Response rates were highest in the subset of TET2 mutant patients without clonal ASXL1 mutations (OR 3.65, P = .009). Mutations of TP53 (hazard ratio [HR] 2.01, P = .002) and PTPN11 (HR 3.26, P = .006) were associated with shorter overall survival but not drug response. Murine-competitive bone marrow transplantation followed by treatment with AZA demonstrated that Tet2-null cells have an engraftment advantage over Tet2-WT cells. AZA significantly decreased this advantage for Tet2-null cells (P = .002) but not Tet2-WT cells (P = .212). Overall, Tet2 loss appears to sensitize cells to treatment with AZA in vivo, and TET2 mutations can identify patients more likely to respond to HMAs.

Indexed as

MutationAgedAnimalsAzacitidineBiomarkers, TumorBone Marrow TransplantationDecitabineDioxygenasesDNA-Binding ProteinsDNA MethylationDNA Modification MethylasesEnzyme InhibitorsFemaleGene FrequencyGenotypeHumansASXL1 protein, humanAzacitidineBiomarkers, TumorDecitabineDioxygenasesDNA-Binding ProteinsDNA Modification MethylasesEnzyme InhibitorsProto-Oncogene ProteinsRepressor ProteinsTET2 protein, humanTumor Suppressor Protein p53

Identifiers

PMID25224413
PMCPMC4208285
OpenAlexW1964809738

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.