Evidence map›Paper›PMID 25223802›Full record

ArticleBiochemical and biophysical research communications2014

Restoration of structural stability and ligand binding after removal of the conserved disulfide bond in tear lipocalin.

Oktay K Gasymov, Adil R Abduragimov, Ben J Glasgow

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Oktay K GasymovDepartments of Pathology and Ophthalmology and Jules Stein Eye Institute, University California at Los Angeles, CA 90095, United States. Electronic address: ogassymov@mednet.ucla.edu.
Adil R AbduragimovDepartments of Pathology and Ophthalmology and Jules Stein Eye Institute, University California at Los Angeles, CA 90095, United States.
Ben J GlasgowDepartments of Pathology and Ophthalmology and Jules Stein Eye Institute, University California at Los Angeles, CA 90095, United States. Electronic address: bglasgow@mednet.ucla.edu.
Doheny Eye Institute · US

Funding

Vision Research Core at UCLAP30EY000331 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Gregory Darin Field, DAVID S WILLIAMS · 1985 to 2026
$16.8M
Proteins in the Molecular Mechanisms of Tear Film FormationR01EY011224 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GLASGOW, BEN J · 2001 to 2020
$6.8M
PROTEINS IN MOLECULAR MECHANISMS OF TEAR FILM FORMATIONR29EY011224 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GLASGOW, BEN J · 1996 to 2000
$116k
NEI NIH HHS EY00331NEI NIH HHS EY11224NEI NIH HHS P30 EY000331NEI NIH HHS R01 EY011224
6 · The paper itself

Abstract

Disulfide bonds play diverse structural and functional roles in proteins. In tear lipocalin (TL), the conserved sole disulfide bond regulates stability and ligand binding. Probing protein structure often involves thiol selective labeling for which removal of the disulfide bonds may be necessary. Loss of the disulfide bond may destabilize the protein so strategies to retain the native state are needed. Several approaches were tested to regain the native conformational state in the disulfide-less protein. These included the addition of trimethylamine N-oxide (TMAO) and the substitution of the Cys residues of disulfide bond with residues that can either form a potential salt bridge or others that can create a hydrophobic interaction. TMAO stabilized the protein relaxed by removal of the disulfide bond. In the disulfide-less mutants of TL, 1.0M TMAO increased the free energy change (ΔG(0)) significantly from 2.1 to 3.8kcal/mol. Moderate recovery was observed for the ligand binding tested with NBD-cholesterol. Because the disulfide bond of TL is solvent exposed, the substitution of the disulfide bond with a potential salt bridge or hydrophobic interaction did not stabilize the protein. This approach should work for buried disulfide bonds. However, for proteins with solvent exposed disulfide bonds, the use of TMAO may be an excellent strategy to restore the native conformational states in disulfide-less analogs of the proteins.

Indexed as

Amino Acid SequenceBinding SitesConserved SequenceDisulfidesHumansLipocalinsMolecular Sequence DataProtein BindingProtein ConformationStructure-Activity RelationshipTearsDisulfidesLipocalinsDisulfide bondLigand binding kineticsProtein destabilizationTMAOUrea unfolding

Identifiers

PMID25223802
PMCPMC4219327
OpenAlexW1970675272

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.