Evidence map›Paper›PMID 25221754›Full record

ArticleAdvanced biomedical research2014

Comparison of three phenotypic and deoxyribonucleic acid extraction methods for isolation and Identification of Nocardia spp.

Jamshid Faghri, Samane Bourbour, Sharare Moghim, Mohsen Meidani, Hajiye Ghasemian Safaei, Nafise Hosseini, Bahram Nasr Esfahani, Hussein Fazeli, Mansour Sedighi

Open access · goldAbstract read
In one paragraph

Article in Advanced biomedical research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Comprehensive Diagnosis, Treatment, and Outcome ofPathogens (Basel, Switzerland) · 2024
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  3. Disseminated nocardiosis caused byExperimental and therapeutic medicine · 2016
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  4. Article
  5. Isolation of NocardiaIndian journal of dermatology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Jamshid FaghriDepartment of Bacteriology and Virology, Medical School, Isfahan University of Medical Sciences, Isfahan, Iran.
Samane BourbourDepartment of Bacteriology and Virology, Medical School, Isfahan University of Medical Sciences, Isfahan, Iran.
Sharare MoghimDepartment of Bacteriology and Virology, Medical School, Isfahan University of Medical Sciences, Isfahan, Iran.
Mohsen MeidaniDepartment of Infectious Diseases, Infectious and Tropical Diseases center, Isfahan University of Medical Sciences, Isfahan, Iran.
Hajiye Ghasemian SafaeiDepartment of Bacteriology and Virology, Medical School, Isfahan University of Medical Sciences, Isfahan, Iran.
Nafise HosseiniDepartment of Bacteriology and Virology, Medical School, Isfahan University of Medical Sciences, Isfahan, Iran.
Bahram Nasr EsfahaniDepartment of Bacteriology and Virology, Medical School, Isfahan University of Medical Sciences, Isfahan, Iran.
Hussein FazeliDepartment of Bacteriology and Virology, Medical School, Isfahan University of Medical Sciences, Isfahan, Iran.
Mansour SedighiDepartment of Bacteriology and Virology, Medical School, Isfahan University of Medical Sciences, Isfahan, Iran.
Isfahan University of Medical Sciences · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe aerobic Actinomycetes are a large group of soil-indwelling bacteria that are distributed in world-wide. These Gram-positive bacteria are most commonly associated with opportunistic infections in both immunocompromised and immunocompetent hosts. MATERIALS AND

methodsIn this study, three phenotypic and deoxyribonucleic acid (DNA) extraction methods for isolation and identification of Nocardia genus were compared. Samples were taken in five different locations of Isfahan's suburb from hospitals area, parks, agricultural lands, gardens, arid lands with different soil temperature and pH.

resultsIn this study, showed that slip-buried-method was better than two other phenotypic methods; 14 out of 70 soil samples (20%) were positive for Nocardia spp. DNA of positive samples were extracted with three techniques and DNA extraction by microwave technique was better than others. This technique was confirmed with observation of DNA bands on 1% agarose gel.

conclusionsThese bacteria are important in immune deficient patients such as cancer patients, transplant recipients, tuberculosis; acquired immunodeficiency syndrome etc., Their affluence is unsteady in different zones of the world. In this study, among the three phenotypic methods for the isolation of Nocardia slip-buried method was better than other methods. Among DNA extraction techniques, DNA extraction by microwave method would be selective method for DNA extraction of Nocardia spp. compared with others techniques.

Indexed as

Deoxyribonucleic acid extraction techniquesNocardia spp.phenotypic methodssoil

Identifiers

PMID25221754
PMCPMC4162071
OpenAlexW2001665111

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.