Evidence map›Paper›PMID 25220213›Full record

ArticleImmunity2014

Distinct contributions of Aire and antigen-presenting-cell subsets to the generation of self-tolerance in the thymus.

Justin S A Perry, Chan-Wang J Lio, Andrew L Kau, Katherine Nutsch, Zhuo Yang, Jeffrey I Gordon, Kenneth M Murphy, Chyi-Song Hsieh

Open access · bronzeAbstract read
In one paragraph

Article in Immunity, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 174 papers.

0numbers the graph read from it
0cells of the map it votes in
174citing papers in PubMed
11.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

174 citing papers in PubMed, 261 citations in OpenAlex.

  1. Review
  2. Article
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  5. Increased Nur77 is disconnected from TCR affinity in insulin-specific Tregs.Journal of immunology (Baltimore, Md. : 1950) · 2026
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Thymic Dendritic Cells Revisited.Immunological reviews · 2025
    Review
  13. Review
  14. Regulatory T Cell-Based Adoptive Cell Therapy in Autoimmunity.International journal of molecular sciences · 2025
    Review
  15. Unexpected heterogeneity and tissue-specific properties of the thymic hematopoietic antigen-presenting cell network.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Review
  17. Review
  18. Review
  19. Sterile production of interferons in the thymus.Journal of immunology (Baltimore, Md. : 1950) · 2025
    Review
  20. Article

114 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Justin S A PerryDivision of Rheumatology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA.
Chan-Wang J LioDivision of Rheumatology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA.
Andrew L KauCenter for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63108, USA.
Katherine NutschDivision of Rheumatology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA.
Zhuo YangDivision of Rheumatology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA.
Jeffrey I GordonCenter for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63108, USA.
Kenneth M MurphyHoward Hughes Medical Institute and Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Chyi-Song HsiehDivision of Rheumatology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA. Electronic address: chsieh@wustl.edu.
Washington University in St. Louis · USHoward Hughes Medical Institute · US

Funding

UNIQUE ROLES OF ANTIGEN PRESENTING CELLS ON T CELL TOLERANCE AND AUTOIMMUNITYR01AI079187 · NIAID · WASHINGTON UNIVERSITY · PI HSIEH, CHYI S · 2008 to 2021
$5.8M
The human gut microbiome, malnutrition and vaccine responsesF32DK091044 · NIDDK · WASHINGTON UNIVERSITY · PI KAU, ANDREW LEON · 2011 to 2013
$178k
NIAID NIH HHS AI079187NIAID NIH HHS AI079187-06S1NIAID NIH HHS R01 AI079187Wellcome Trust
6 · The paper itself

Abstract

The contribution of thymic antigen-presenting-cell (APC) subsets in selecting a self-tolerant T cell population remains unclear. We show that bone marrow (BM) APCs and medullary thymic epithelial cells (mTECs) played nonoverlapping roles in shaping the T cell receptor (TCR) repertoire by deletion and regulatory T (Treg) cell selection of distinct TCRs. Aire, which induces tissue-specific antigen expression in mTECs, affected the TCR repertoire in a manner distinct from mTEC presentation. Approximately half of Aire-dependent deletion or Treg cell selection utilized a pathway dependent on antigen presentation by BM APCs. Batf3-dependent CD8α⁺ dendritic cells (DCs) were the crucial BM APCs for Treg cell selection via this pathway, showing enhanced ability to present antigens from stromal cells. These results demonstrate the division of function between thymic APCs in shaping the self-tolerant TCR repertoire and reveal an unappreciated cooperation between mTECs and CD8α⁺ DCs for presentation of Aire-induced self-antigens to developing thymocytes.

Indexed as

AIRE ProteinAnimalsAntigen PresentationAutoantigensBasic-Leucine Zipper Transcription FactorsBone Marrow CellsCD8 AntigensCell DifferentiationDendritic CellsEpithelial CellsMiceMice, Inbred C57BLMice, KnockoutReceptors, Antigen, T-Cell, alpha-betaRepressor ProteinsSelf ToleranceAIRE ProteinAutoantigensBasic-Leucine Zipper Transcription FactorsCD8alpha antigenCD8 AntigensReceptors, Antigen, T-Cell, alpha-betaRepressor ProteinsSNFT protein, mouseTranscription Factors

Identifiers

PMID25220213
PMCPMC4175925
OpenAlexW2026027130

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.