Evidence map›Paper›PMID 25219446›Full record

ArticleMicrobial ecology2015

Bacterial and archaeal communities in bleached mottles of tropical podzols.

K J Silva, P Vidal-Torrado, M R Lambais

Abstract read
PubMed Publisher
In one paragraph

Article in Microbial ecology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 9 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

K J SilvaDepartment of Soil Science, University of São Paulo, Piracicaba, São Paulo, 13418-900, Brazil.
P Vidal-Torrado
M R Lambais
Universidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Podzols frequently show bleached mottles depleted in organic matter, most readily visible in the Bh horizons. Even though the process of bleached mottles development is not understood, it has been suggested that the selective degradation of organic matter by soil microorganisms has a major contribution. In this study, we examined the bacterial and archaeal communities along three Brazilian coastal podzol profiles, as well as in bleached mottles and their immediate vicinity, using 16S rRNA gene profiling. Our results showed that the bacterial and archaeal community structures in the studied podzols varied with depth and that the bacterial communities in the bleached mottles were significantly different from that in their immediate vicinity. In contrast, the archaeal communities in bleached mottles were significantly different from their vicinity only in the Bertioga (BT) profile, based on sequencing of amplicons of the 16S rRNA gene. Redundancy analyses showed that the bacterial community structures in the bleached mottles of BT were negatively associated mostly with the levels of organic carbon, exchangeable-aluminum (Al), exchangeable potassium, and Al-saturation, whereas in the surrounding soil, the opposite was observed. In the Ilha Comprida (IC) profiles, no such relationships were observed, suggesting distinct drivers of the bacterial community structures in bleached mottles of different podzols. In the bleached mottles of the BT profile, operational taxonomic units (OTUs) phylogenetically related to Pseudomonas were the most abundant Bacteria, whereas in the IC profiles, OTUs related to Acidobacteria were predominant. Thermoprotei (Crenarchaeota) were the most abundant Archaea in the bleached mottles and in their immediate vicinity. Based on the diverse metabolic capabilities of Pseudomonas and Acidobacteria, our data suggest that these groups of bacteria may be involved in the development of bleached mottles in the podzols studied and that the selection of specific bacterial populations in the bleached mottles may depend on the local edaphic conditions.

Indexed as

PhylogenySoil MicrobiologyArchaeaBacteriaBrazilChemical PhenomenaCrenarchaeotaDNA, ArchaealDNA, BacterialPhylogeographyRNA, Ribosomal, 16SSequence Analysis, DNADNA, ArchaealDNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID25219446
OpenAlexW1989060725

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.