Evidence map›Paper›PMID 25217712›Full record

ArticleVirology2014

What is for dinner? Viral metagenomics of US store bought beef, pork, and chicken.

Wen Zhang, Linlin Li, Xutao Deng, Beatrix Kapusinszky, Eric Delwart

Abstract read
In one paragraph

Article in Virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
16.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 104 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Gyrovirus: current status and challenge.Frontiers in microbiology · 2024
    Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Viruses · 2022
    Article
  16. Microorganisms · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Wen ZhangBlood Systems Research Institute, San Francisco, CA 94118, USA; Department of Microbiology, School of Medicine, Jiangsu University, Jiangsu, Zhenjiang 212013, China; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA 94118, USA.
Linlin LiBlood Systems Research Institute, San Francisco, CA 94118, USA; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA 94118, USA.
Xutao DengBlood Systems Research Institute, San Francisco, CA 94118, USA; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA 94118, USA.
Beatrix KapusinszkyBlood Systems Research Institute, San Francisco, CA 94118, USA; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA 94118, USA.
Eric DelwartBlood Systems Research Institute, San Francisco, CA 94118, USA; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA 94118, USA. Electronic address: delwarte@medicine.ucsf.edu.
University of California, San Francisco · USJiangsu University · CN

Funding

Metagenomic detection of emerging viruses in the blood supplyR01HL105770 · NHLBI · VITALANT · PI DELWART, ERIC L · 2011 to 2015
$2.4M
NHLBI NIH HHS R01 HL105770NHLBI NIH HHS R01HL105770
6 · The paper itself

Abstract

We describe here the metagenomics-derived viral sequences detected in beef, pork, and chicken purchased from stores in San Francisco. In beef we detected four previously reported viruses (two parvoviruses belonging to different genera, an anellovirus, and one circovirus-like virus) and one novel bovine polyomavirus species (BPyV2-SF) whose closest relatives infect primates. Detection of porcine hokovirus in beef indicated that this parvovirus can infect both ungulate species. In pork we detected four known parvoviruses from three genera, an anellovirus, and pig circovirus 2. Chicken meat contained numerous gyrovirus sequences including those of chicken anemia virus and of a novel gyrovirus species (GyV7-SF). Our results provide an initial characterization of some of the viruses commonly found in US store-bought meats which included a diverse group of parvoviruses and viral families with small circular DNA genomes. Whether any of these viruses can infect humans will require testing human sera for specific antibodies.

Indexed as

AnimalsCattleChickensMeatMetagenomicsMolecular Sequence DataPhylogenySwineVirusesGyrovirusMeatParvoviridaePolyomaviridaeViral metagenomics

Identifiers

PMID25217712
PMCPMC4252299
OpenAlexW2036669931

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.