Evidence map›Paper›PMID 25217575›Full record

ArticleBioinformatics (Oxford, England)2015

EUROCarbDB(CCRC): a EUROCarbDB node for storing glycomics standard data.

Khalifeh Al Jadda, Melody P Porterfield, Robert Bridger, Christian Heiss, Michael Tiemeyer, Lance Wells, John A Miller, William S York, Rene Ranzinger

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Bioinformatics (Oxford, England), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. The Glycoscience of Immunity.Trends in immunology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Khalifeh Al JaddaDepartment of Computer Science and Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
Melody P PorterfieldDepartment of Computer Science and Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
Robert BridgerDepartment of Computer Science and Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
Christian HeissDepartment of Computer Science and Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
Michael TiemeyerDepartment of Computer Science and Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
Lance WellsDepartment of Computer Science and Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
John A MillerDepartment of Computer Science and Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
William S YorkDepartment of Computer Science and Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
Rene RanzingerDepartment of Computer Science and Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.

Funding

Structural Basis of Immune Recognition of Glycosylated AntigensU54GM062116 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI BLIXT, OLA KLAS · 2001 to 2010
$80.3M
TR&D1: Stem Cell and Induced Pluripotent Stem Cell Resources (Pages 116-134)P41GM103490 · NIGMS · UNIVERSITY OF GEORGIA · PI PIERCE, J. MICHAEL · 2012 to 2018
$13.7M
NIGMS NIH HHS 5U54GM062116-10NIGMS NIH HHS 8P41GM103490NIGMS NIH HHS P41 GM103490NIGMS NIH HHS U54 GM062116
6 · The paper itself

Abstract

motivationIn the field of glycomics research, several different techniques are used for structure elucidation. Although multiple techniques are often used to increase confidence in structure assignments, most glycomics databases allow storing of only a single type of experimental data. In addition, the methods used to prepare a sample for analysis is seldom recorded making it harder to reproduce the analytical data and results.

resultsWe have extended the freely available EUROCarbDB framework to allow the submission of experimental data and the reporting of several orthogonal experimental datasets. The features aim to increase the understandability and reproducibility of the reported data. AVAILABILITY AND IMPLEMENTATION: The installation with the glycan standards is available at http://glycomics.ccrc.uga.edu/eurocarb/. The source code of the project is available at https://code.google.com/p/ucdb/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Indexed as

Databases as TopicSoftwareCarbohydratesComputational BiologyGlycomicsHumansCarbohydrates

Identifiers

PMID25217575
PMCPMC4287942

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.