Evidence map›Paper›PMID 25217508›Full record

ArticleThe Plant cell2014

Arabidopsis thaliana RNase H2 deficiency counteracts the needs for the WEE1 checkpoint kinase but triggers genome instability.

Pooneh Kalhorzadeh, Zhubing Hu, Toon Cools, Simon Amiard, Eva-Maria Willing, Nancy De Winne, Kris Gevaert, Geert De Jaeger, Korbinian Schneeberger, Charles I White and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Regulation of Heat Stress inInternational journal of molecular sciences · 2022
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  8. A Mutation in DNA Polymerase α RescuesInternational journal of molecular sciences · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Ribonucleotide incorporation into DNA during DNA replication and its consequences.Critical reviews in biochemistry and molecular biology · 2021
    Review
  14. Article
  15. Article
  16. OsMre11 Is Required for Mitosis during Rice Growth and Development.International journal of molecular sciences · 2020
    Article
  17. Article
  18. Cloning, transformation and expression of cell cycle-associated protein kinaseJournal, genetic engineering & biotechnology · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Pooneh KalhorzadehDepartment of Plant Systems Biology, Flanders Institute for Biotechnology (VIB), B-9052 Ghent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium.
Zhubing HuDepartment of Plant Systems Biology, Flanders Institute for Biotechnology (VIB), B-9052 Ghent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium.
Toon CoolsDepartment of Plant Systems Biology, Flanders Institute for Biotechnology (VIB), B-9052 Ghent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium.
Simon AmiardGénétique, Reproduction et Développement, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 6293-Clermont Université-Institut National de la Santé et de la Recherche Médicale U1103, F-63177 Aubière, France.
Eva-Maria WillingDepartment for Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, 50829 Cologne, Germany.
Nancy De WinneDepartment of Plant Systems Biology, Flanders Institute for Biotechnology (VIB), B-9052 Ghent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium.
Kris GevaertDepartment of Medical Protein Research, Flanders Institute for Biotechnology (VIB), B-9000 Ghent, Belgium Department of Biochemistry, Ghent University, B-9000 Ghent, Belgium.
Geert De JaegerDepartment of Plant Systems Biology, Flanders Institute for Biotechnology (VIB), B-9052 Ghent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium.
Korbinian SchneebergerDepartment for Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, 50829 Cologne, Germany.
Charles I WhiteGénétique, Reproduction et Développement, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 6293-Clermont Université-Institut National de la Santé et de la Recherche Médicale U1103, F-63177 Aubière, France.
Lieven De VeylderDepartment of Plant Systems Biology, Flanders Institute for Biotechnology (VIB), B-9052 Ghent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium lieven.deveylder@psb.vib-ugent.be.
Ghent University · BEMax Planck Institute for Plant Breeding Research · DEVlaams Instituut voor Biotechnologie · BEGenetique Reproduction and Developpement · FRInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The WEE1 kinase is an essential cell cycle checkpoint regulator in Arabidopsis thaliana plants experiencing replication defects. Whereas under non-stress conditions WEE1-deficient plants develop normally, they fail to adapt to replication inhibitory conditions, resulting in the accumulation of DNA damage and loss of cell division competence. We identified mutant alleles of the genes encoding subunits of the ribonuclease H2 (RNase H2) complex, known for its role in removing ribonucleotides from DNA-RNA duplexes, as suppressor mutants of WEE1 knockout plants. RNase H2 deficiency triggered an increase in homologous recombination (HR), correlated with the accumulation of γ-H2AX foci. However, as HR negatively impacts the growth of WEE1-deficient plants under replication stress, it cannot account for the rescue of the replication defects of the WEE1 knockout plants. Rather, the observed increase in ribonucleotide incorporation in DNA indicates that the substitution of deoxynucleotide with ribonucleotide abolishes the need for WEE1 under replication stress. Strikingly, increased ribonucleotide incorporation in DNA correlated with the occurrence of small base pair deletions, identifying the RNase H2 complex as an important suppressor of genome instability.

Indexed as

Cell Cycle CheckpointsGenomic InstabilityAmino Acid SequenceArabidopsisArabidopsis ProteinsBase PairingBase SequenceCatalytic DomainGenes, PlantHydroxyureaMolecular Sequence DataMutationMutation RateProtein Serine-Threonine KinasesRecombination, GeneticRibonuclease HArabidopsis ProteinsHydroxyureaProtein Serine-Threonine KinasesRibonuclease Hribonuclease HIIRibonucleotidesWEE1 protein, Arabidopsis

Identifiers

PMID25217508
PMCPMC4213155
OpenAlexW2142803195

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.