Evidence map›Paper›PMID 25216679›Full record

ArticleThe EMBO journal2014

Architecture of the Saccharomyces cerevisiae SAGA transcription coactivator complex.

Yan Han, Jie Luo, Jeffrey Ranish, Steven Hahn

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 114 citations in OpenAlex.

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  16. SAGA Complex Subunits inFrontiers in cellular and infection microbiology · 2022
    Article
  17. Article
  18. Article
  19. The biochemical and genetic discovery of the SAGA complex.Biochimica et biophysica acta. Gene regulatory mechanisms · 2021
    Review
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Yan HanDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, USA Biological Physics, Structure and Design Program, University of Washington, Seattle, WA, USA.
Jie LuoInstitute for Systems Biology, Seattle, WA, USA.
Jeffrey RanishInstitute for Systems Biology, Seattle, WA, USA.
Steven HahnDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, USA shahn@fhcrc.org.
Fred Hutch Cancer Center · USInstitute for Systems Biology · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI BALIGA, NITIN S · 2006 to 2016
$30.6M
Mechanisms of eukaryotic transcription activationR01GM075114 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HAHN, STEVEN M · 2005 to 2020
$7.9M
Mapping the Dynamic Architecture of the Human Mediator ComplexR21CA175849 · NCI · INSTITUTE FOR SYSTEMS BIOLOGY · PI RANISH, JEFFREY A, TAATJES, DYLAN J · 2013 to 2014
$385k
NCI NIH HHS P30 CA015704NCI NIH HHS R21 CA175849NCI NIH HHS R21CA175849NIGMS NIH HHS 2P50GM076547NIGMS NIH HHS 2R01GM057114NIGMS NIH HHS P50 GM076547NIGMS NIH HHS R01 GM075114
6 · The paper itself

Abstract

The conserved transcription coactivator SAGA is comprised of several modules that are involved in activator binding, TBP binding, histone acetylation (HAT) and deubiquitination (DUB). Crosslinking and mass spectrometry, together with genetic and biochemical analyses, were used to determine the molecular architecture of the SAGA-TBP complex. We find that the SAGA Taf and Taf-like subunits form a TFIID-like core complex at the center of SAGA that makes extensive interactions with all other SAGA modules. SAGA-TBP binding involves a network of interactions between subunits Spt3, Spt8, Spt20, and Spt7. The HAT and DUB modules are in close proximity, and the DUB module modestly stimulates HAT function. The large activator-binding subunit Tra1 primarily connects to the TFIID-like core via its FAT domain. These combined results were used to derive a model for the arrangement of the SAGA subunits and its interactions with TBP. Our results provide new insight into SAGA function in gene regulation, its structural similarity with TFIID, and functional interactions between the SAGA modules.

Indexed as

Models, BiologicalGene Expression Regulation, FungalMultiprotein ComplexesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTrans-ActivatorsTranscription Factor TFIIDMultiprotein ComplexesSaccharomyces cerevisiae ProteinsSAGA complex, S cerevisiaeTrans-ActivatorsTranscription Factor TFIIDcoactivatorgene regulationproteomicstranscription

Identifiers

PMID25216679
PMCPMC4283410
OpenAlexW2114425916

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.