Evidence map›Paper›PMID 25216269›Full record

ArticlePloS one2014

Proteomic evidences for rex regulation of metabolism in toxin-producing Bacillus cereus ATCC 14579.

Sabrina Laouami, Géremy Clair, Jean Armengaud, Catherine Duport

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

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  8. Adaptation inFrontiers in microbiology · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Sabrina LaouamiAvignon Université/INRA, SQPOV UMR408, Avignon, France; INRA, SQPOV UMR408, Avignon, France.
Géremy ClairAvignon Université/INRA, SQPOV UMR408, Avignon, France; INRA, SQPOV UMR408, Avignon, France; Laboratoire de Biochimie des Systèmes Perturbés, CEA Marcoule, DSV-iBEB-SBTN-LBSP, Bagnols-sur-Cèze, France.
Jean ArmengaudLaboratoire de Biochimie des Systèmes Perturbés, CEA Marcoule, DSV-iBEB-SBTN-LBSP, Bagnols-sur-Cèze, France.
Catherine DuportAvignon Université/INRA, SQPOV UMR408, Avignon, France; INRA, SQPOV UMR408, Avignon, France.
Université d'Avignon et des Pays de Vaucluse · FRCEA Marcoule · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The facultative anaerobe, Bacillus cereus, causes diarrheal diseases in humans. Its ability to deal with oxygen availability is recognized to be critical for pathogenesis. The B. cereus genome comprises a gene encoding a protein with high similarities to the redox regulator, Rex, which is a central regulator of anaerobic metabolism in Bacillus subtilis and other Gram-positive bacteria. Here, we showed that B. cereus rex is monocistronic and down-regulated in the absence of oxygen. The protein encoded by rex is an authentic Rex transcriptional factor since its DNA binding activity depends on the NADH/NAD+ ratio. Rex deletion compromised the ability of B. cereus to cope with external oxidative stress under anaerobiosis while increasing B. cereus resistance against such stress under aerobiosis. The deletion of rex affects anaerobic fermentative and aerobic respiratory metabolism of B. cereus by decreasing and increasing, respectively, the carbon flux through the NADH-recycling lactate pathway. We compared both the cellular proteome and exoproteome of the wild-type and Δrex cells using a high throughput shotgun label-free quantitation approach and identified proteins that are under control of Rex-mediated regulation. Proteomics data have been deposited to the ProteomeXchange with identifier PXD000886. The data suggest that Rex regulates both the cross-talk between metabolic pathways that produce NADH and NADPH and toxinogenesis, especially in oxic conditions.

Indexed as

ProteomicsAnaerobiosisBacillus cereusDNA, BacterialEnterotoxinsExotoxinsGene Expression Regulation, BacterialGene Products, rexHumansMembrane ProteinsMetabolic Networks and PathwaysMolecular ChaperonesNADProtein BindingDNA, BacterialEnterotoxinsExotoxinsGene Products, rexMembrane ProteinsMolecular ChaperonesNAD

Identifiers

PMID25216269
PMCPMC4162614
OpenAlexW2051717181

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.