Evidence map›Paper›PMID 25216190›Full record

ArticlePloS one2014

The 203 kbp mitochondrial genome of the phytopathogenic fungus Sclerotinia borealis reveals multiple invasions of introns and genomic duplications.

Andrey V Mardanov, Alexey V Beletsky, Vitaly V Kadnikov, Alexander N Ignatov, Nikolai V Ravin

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
6.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
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  6. Exploring Mitochondrial Heterogeneity and Evolutionary Dynamics inInternational journal of molecular sciences · 2024
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  7. Comparative Analysis of the Mitochondrial Genome Sequences ofJournal of fungi (Basel, Switzerland) · 2024
    Article
  8. Article
  9. Article
  10. Functional annotation and comparative analysis of fourSaudi journal of biological sciences · 2023
    Article
  11. The complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2023
    Article
  12. Frontiers in microbiology · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Journal of fungi (Basel, Switzerland) · 2021
    Article
  17. Article
  18. Article
  19. The mitogenomes of two saprophytic Boletales species (Computational and structural biotechnology journal · 2021
    Article
  20. The First Mitochondrial Genome ofFrontiers in fungal biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Andrey V MardanovCentre "Bioengineering", Russian Academy of Sciences, Moscow, Russia.
Alexey V BeletskyCentre "Bioengineering", Russian Academy of Sciences, Moscow, Russia.
Vitaly V KadnikovCentre "Bioengineering", Russian Academy of Sciences, Moscow, Russia.
Alexander N IgnatovCentre "Bioengineering", Russian Academy of Sciences, Moscow, Russia.
Nikolai V RavinCentre "Bioengineering", Russian Academy of Sciences, Moscow, Russia.
Russian Academy of Sciences · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here we report the complete sequence of the mitochondrial (mt) genome of the necrotrophic phytopathogenic fungus Sclerotinia borealis, a member of the order Helotiales of Ascomycetes. The 203,051 bp long mtDNA of S. borealis represents one of the largest sequenced fungal mt genomes. The large size is mostly determined by the presence of mobile genetic elements, which include 61 introns. Introns contain a total of 125,394 bp, are scattered throughout the genome, and are found in 12 protein-coding genes and in the ribosomal RNA genes. Most introns contain complete or truncated ORFs that are related to homing endonucleases of the LAGLIDADG and GIY-YIG families. Integrations of mobile elements are also evidenced by the presence of two regions similar to fragments of inverton-like plasmids. Although duplications of some short genome regions, resulting in the appearance of truncated extra copies of genes, did occur, we found no evidences of extensive accumulation of repeat sequences accounting for mitochondrial genome size expansion in some other fungi. Comparisons of mtDNA of S. borealis with other members of the order Helotiales reveal considerable gene order conservation and a dynamic pattern of intron acquisition and loss during evolution. Our data are consistent with the hypothesis that horizontal DNA transfer has played a significant role in the evolution and size expansion of the S. borealis mt genome.

Indexed as

Evolution, MolecularGenome, MitochondrialAscomycotaDNA, MitochondrialGene Transfer, HorizontalGenome, FungalIntronsSegmental Duplications, GenomicDNA, Mitochondrial

Identifiers

PMID25216190
PMCPMC4162613
OpenAlexW2031104638

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.