Evidence map›Paper›PMID 25215494›Full record

ArticleCell2014

The cyclic dinucleotide c-di-AMP is an allosteric regulator of metabolic enzyme function.

Kamakshi Sureka, Philip H Choi, Mimi Precit, Matthieu Delince, Daniel A Pensinger, TuAnh Ngoc Huynh, Ashley R Jurado, Young Ah Goo, Martin Sadilek, Anthony T Iavarone and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 142 papers.

0numbers the graph read from it
0cells of the map it votes in
142citing papers in PubMed
10.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

142 citing papers in PubMed, 219 citations in OpenAlex.

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  11. TrkA ofMicrobiology (Reading, England) · 2025
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82 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Kamakshi SurekaDepartment of Microbiology, University of Washington, Seattle, WA 98195, USA.
Philip H ChoiDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Mimi PrecitDepartment of Microbiology, University of Washington, Seattle, WA 98195, USA.
Matthieu DelinceDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
Daniel A PensingerDepartment of Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI 53706, USA.
TuAnh Ngoc HuynhDepartment of Microbiology, University of Washington, Seattle, WA 98195, USA.
Ashley R JuradoDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Young Ah GooDepartment of Pharmaceutical Sciences, University of Maryland, Baltimore, MD 21201, USA.
Martin SadilekDepartment of Chemistry, University of Washington, Seattle, WA 98195, USA.
Anthony T IavaroneQB3/Chemistry Mass Spectrometry Facility, University of California, Berkeley, CA 94720, USA.
John-Demian SauerDepartment of Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI 53706, USA.
Liang TongDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA. Electronic address: ltong@columbia.edu.
Joshua J WoodwardDepartment of Microbiology, University of Washington, Seattle, WA 98195, USA. Electronic address: jjwoodwa@uw.edu.
University of Washington · USColumbia University · USUniversity of California, Berkeley · USUniversity of Wisconsin–Madison · USUniversity of Maryland, Baltimore · US

Funding

Variation in Human Innate ImmunityU54AI057141 · NIAID · UNIVERSITY OF WASHINGTON · PI COOKSON, BRAD T · 2003 to 2013
$102.3M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007367 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI REINER, STEVEN L · 1985 to 2021
$25.1M
Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Structural biology of enzymes in fatty acid metabolismR01DK067238 · NIDDK · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI TONG, LIANG · 2004 to 2012
$2.6M
Molecular Medicine Training ProgramT32GM095421 · NIGMS · UNIVERSITY OF WASHINGTON · PI HAWN, THOMAS R, LILES, W. CONRAD · 2011 to 2020
$1.6M
Replacement of an aging X-ray diffraction system for protein crystallographyS10OD012018 · OD · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI TONG, LIANG · 2012 to 2012
$405k
NIAID NIH HHS U54 AI057141NIAID NIH HHS U54AI057141NIDDK NIH HHS R01 DK067238NIDDK NIH HHS R01DK067238NIGMS NIH HHS GM007367NIGMS NIH HHS P41 GM111244NIGMS NIH HHS T32 GM007367NIGMS NIH HHS T32 GM095421NIH HHS OD012208NIH HHS S10 OD012018
6 · The paper itself

Abstract

Cyclic di-adenosine monophosphate (c-di-AMP) is a broadly conserved second messenger required for bacterial growth and infection. However, the molecular mechanisms of c-di-AMP signaling are still poorly understood. Using a chemical proteomics screen for c-di-AMP-interacting proteins in the pathogen Listeria monocytogenes, we identified several broadly conserved protein receptors, including the central metabolic enzyme pyruvate carboxylase (LmPC). Biochemical and crystallographic studies of the LmPC-c-di-AMP interaction revealed a previously unrecognized allosteric regulatory site 25 Å from the active site. Mutations in this site disrupted c-di-AMP binding and affected catalytic activity of LmPC as well as PC from pathogenic Enterococcus faecalis. C-di-AMP depletion resulted in altered metabolic activity in L. monocytogenes. Correction of this metabolic imbalance rescued bacterial growth, reduced bacterial lysis, and resulted in enhanced bacterial burdens during infection. These findings greatly expand the c-di-AMP signaling repertoire and reveal a central metabolic regulatory role for a cyclic dinucleotide.

Indexed as

Allosteric RegulationAmino Acid SequenceAnimalsBacteriolysisBinding SitesCrystallography, X-RayDinucleoside PhosphatesHost-Pathogen InteractionsListeria monocytogenesListeriosisMiceModels, MolecularMolecular Sequence DataPyruvate Carboxylasecyclic diadenosine phosphateDinucleoside PhosphatesPyruvate Carboxylase

Identifiers

PMID25215494
PMCPMC4166403
OpenAlexW1965643794

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.