ArticleSemantic web2013
BioPortal as a Dataset of Linked Biomedical Ontologies and Terminologies in RDF.
Article in Semantic web, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
32 citing papers in PubMed.
- Reviewing the Computational Landscape of Drug Repurposing: Evolution from Structure-Based Methods to LLM-Based Methods.Biomolecules · 2026Review
- The Ontology of Adverse Events in 2025.Scientific data · 2026Article
- Mapping between clinical and preclinical terminologies: eTRANSAFE's Rosetta stone approach.Journal of biomedical semantics · 2025Article
- BioPortal: an open community resource for sharing, searching, and utilizing biomedical ontologies.Nucleic acids research · 2025Article
- Technologies for Interoperable Internet of Medical Things Platforms to Manage Medical Emergencies in Home and Prehospital Care: Scoping Review.Journal of medical Internet research · 2025Article
- Leveraging knowledge for explainable AI in personalized cancer treatment: challenges and future directions.Frontiers in digital health · 2025Article
- A framework for integrating biomedical knowledge in Wikidata with open biological and biomedical ontologies and MeSH keywords.Heliyon · 2024Article
- FAIR-EuMon: a FAIR-enabling resource for biodiversity monitoring schemes.Biodiversity data journal · 2024Article
- Conceptual framework and documentation standards of cystoscopic media content for artificial intelligence.Journal of biomedical informatics · 2023Article
- Conceptual Framework and Documentation Standards of Cystoscopic Media Content for Artificial Intelligence.ArXiv · 2023Article
- An Efficient Framework for Video Documentation of Bladder Lesions for Cystoscopy: A Proof-of-Concept Study.Journal of medical systems · 2022Article
- A new framework for host-pathogen interaction research.Frontiers in immunology · 2022Article
- RDFizing the biosynthetic pathway of E.coli O-antigen to enable semantic sharing of microbiology data.BMC microbiology · 2021Article
- Publishing reproducible dynamic kinetic models.Briefings in bioinformatics · 2021Article
- Mapping, Infrastructure, and Data Analysis for the Brazilian Network of Rare Diseases: Protocol for the RARASnet Observational Cohort Study.JMIR research protocols · 2021Article
- TCDO: A Community-Based Ontology for Integrative Representation and Analysis of Traditional Chinese Drugs and Their Properties.Evidence-based complementary and alternative medicine : eCAM · 2021Article
- OHMI: the ontology of host-microbiome interactions.Journal of biomedical semantics · 2019Article
- Fully connecting the Observational Health Data Science and Informatics (OHDSI) initiative with the world of linked open data.Genomics & informatics · 2019Article
- Assessing the practice of biomedical ontology evaluation: Gaps and opportunities.Journal of biomedical informatics · 2018Review
- Supporting shared hypothesis testing in the biomedical domain.Journal of biomedical semantics · 2018Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
Abstract
BioPortal is a repository of biomedical ontologies-the largest such repository, with more than 300 ontologies to date. This set includes ontologies that were developed in OWL, OBO and other formats, as well as a large number of medical terminologies that the US National Library of Medicine distributes in its own proprietary format. We have published the RDF version of all these ontologies at http://sparql.bioontology.org. This dataset contains 190M triples, representing both metadata and content for the 300 ontologies. We use the metadata that the ontology authors provide and simple RDFS reasoning in order to provide dataset users with uniform access to key properties of the ontologies, such as lexical properties for the class names and provenance data. The dataset also contains 9.8M cross-ontology mappings of different types, generated both manually and automatically, which come with their own metadata.
Indexed as
Identifiers
25214827PMC4159173What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.