Evidence map›Paper›PMID 25213864›Full record

ArticleThe Journal of biological chemistry2014

RNA virus population diversity, an optimum for maximal fitness and virulence.

Victoria K Korboukh, Cheri A Lee, Ashley Acevedo, Marco Vignuzzi, Yinghong Xiao, Jamie J Arnold, Stephen Hemperly, Jason D Graci, Avery August, Raul Andino and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 103 citations in OpenAlex.

  1. Article
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  6. High-resolution mapping reveals the mechanism and contribution of genome insertions and deletions to RNA virus evolution.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Article
  8. A Virus Is a Community: Diversity within Negative-Sense RNA Virus Populations.Microbiology and molecular biology reviews : MMBR · 2022
    Review
  9. Article
  10. Article
  11. The nucleotide addition cycle of the SARS-CoV-2 polymerase.bioRxiv : the preprint server for biology · 2021
    Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. Article
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  19. Review
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Victoria K KorboukhFrom the Departments of Biochemistry and Molecular Biology and.
Cheri A LeeFrom the Departments of Biochemistry and Molecular Biology and.
Ashley Acevedothe Department of Microbiology and Immunology, University of California at San Francisco, San Francisco, California 94158.
Marco Vignuzzithe Department of Microbiology and Immunology, University of California at San Francisco, San Francisco, California 94158.
Yinghong Xiaothe Department of Microbiology and Immunology, University of California at San Francisco, San Francisco, California 94158.
Jamie J ArnoldFrom the Departments of Biochemistry and Molecular Biology and.
Stephen HemperlyFrom the Departments of Biochemistry and Molecular Biology and.
Jason D GraciFrom the Departments of Biochemistry and Molecular Biology and.
Avery AugustVeterinary and Biomedical Sciences, Pennsylvania State University, University Park, Pennsylvania 16802 and.
Raul Andinothe Department of Microbiology and Immunology, University of California at San Francisco, San Francisco, California 94158.
Craig E CameronFrom the Departments of Biochemistry and Molecular Biology and cec9@psu.edu.
University of California, San Francisco · US

Funding

GENETICS OF EUCARYOTIC AND PROCARYOTIC ORGANISMST32GM007810 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ASHRAFI, KAVEH, NARLIKAR, GEETA J · 1985 to 2020
$15.1M
Unbiased Functional Characterization of Enterovirus-Host InteractionsP01AI091575 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KROGAN, NEVAN J · 2011 to 2015
$10.5M
RNA DEPENDENT RNA POLYMERASE MECHANISMR01AI045818 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ARNOLD, JAMIE JON, CAMERON, CRAIG E. · 1999 to 2025
$7.5M
NIAID NIH HHS P01 AI091575NIAID NIH HHS R01 AI045818NIGMS NIH HHS T32 GM007810
6 · The paper itself

Abstract

The ability of an RNA virus to exist as a population of genetically distinct variants permits the virus to overcome events during infections that would otherwise limit virus multiplication or drive the population to extinction. Viral genetic diversity is created by the ribonucleotide misincorporation frequency of the viral RNA-dependent RNA polymerase (RdRp). We have identified a poliovirus (PV) RdRp derivative (H273R) possessing a mutator phenotype. GMP misincorporation efficiency for H273R RdRp in vitro was increased by 2-3-fold that manifested in a 2-3-fold increase in the diversity of the H273R PV population in cells. Circular sequencing analysis indicated that some mutations were RdRp-independent. Consistent with the population genetics theory, H273R PV was driven to extinction more easily than WT in cell culture. Furthermore, we observed a substantial reduction in H273R PV virulence, measured as the ability to cause paralysis in the cPVR mouse model. Reduced virulence correlated with the inability of H273R PV to sustain replication in tissues/organs in which WT persists. Despite the attenuated phenotype, H273R PV was capable of replicating in mice to levels sufficient to induce a protective immune response, even when the infecting dose used was insufficient to elicit any visual signs of infection. We conclude that optimal RdRp fidelity is a virulence determinant that can be targeted for viral attenuation or antiviral therapies, and we suggest that the RdRp may not be the only source of mutations in a RNA virus genome.

Indexed as

Genetic FitnessAnimalsBase SequenceGenome, ViralHeLa CellsHumansImmunityMice, Inbred ICRMolecular Sequence DataMutationPhenotypePoliomyelitisPoliovirusRNA-Dependent RNA PolymeraseVirulenceVirus AssemblyRNA-Dependent RNA PolymerasePoliovirusRNA PolymeraseRNA VirusViral PolymeraseViral Replication

Identifiers

PMID25213864
PMCPMC4207971
OpenAlexW1987253731

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.