Evidence map›Paper›PMID 25211155›Full record

ArticlePloS one2014

The dark recovery rate in the photocycle of the bacterial photoreceptor YtvA is affected by the cellular environment and by hydration.

Francesca Pennacchietti, Stefania Abbruzzetti, Aba Losi, Carmen Mandalari, Roberta Bedotti, Cristiano Viappiani, Francesca Cella Zanacchi, Alberto Diaspro, Wolfgang Gärtner

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Residue alterations within a conserved hydrophobic pocket influence light, oxygen, voltage photoreceptor dark recovery.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2023
    Article
  5. Article
  6. Review
  7. Article
  8. A critical element of the light-induced quaternary structural changes in YtvA-LOV.Protein science : a publication of the Protein Society · 2015
    Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Francesca PennacchiettiFondazione Istituto Italiano di Tecnologia, Genova, Italy.
Stefania AbbruzzettiDipartimento di Fisica e Scienze della Terra, Università di Parma, Parma, Italy; NEST, Istituto Nanoscienze, Consiglio Nazionale delle Ricerche, Pisa, Italy.
Aba LosiDipartimento di Fisica e Scienze della Terra, Università di Parma, Parma, Italy.
Carmen MandalariDipartimento di Fisica e Scienze della Terra, Università di Parma, Parma, Italy.
Roberta BedottiDipartimento di Fisica e Scienze della Terra, Università di Parma, Parma, Italy.
Cristiano ViappianiDipartimento di Fisica e Scienze della Terra, Università di Parma, Parma, Italy; NEST, Istituto Nanoscienze, Consiglio Nazionale delle Ricerche, Pisa, Italy.
Francesca Cella ZanacchiFondazione Istituto Italiano di Tecnologia, Genova, Italy.
Alberto DiasproFondazione Istituto Italiano di Tecnologia, Genova, Italy.
Wolfgang GärtnerMax-Planck-Institute for Chemical Energy Conversion (CEC), Mülheim a.d. Ruhr, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report thermal recovery kinetics of the lit state into the parental dark state, measured for the blue light-sensing photoreceptor YtvA inside overexpressing E. coli and B. subtilis bacterial cells, performed for the wild type and several mutated proteins. Recovery was followed as a recovery of the fluorescence, as this property is only found for the parental but not for the photochemically generated lit state. When cells were deposited onto a microscope glass plate, the observed thermal recovery rate in the photocycle was found ca. ten times faster in comparison to purified YtvA in solution. When the E. coli or B. subtilis colonies were soaked in an isotonic buffer, the dark relaxation became again much slower and was very similar to that observed for YtvA in solution. The observed effects show that rate constants can be tuned by the cellular environment through factors such as hydration.

Indexed as

Bacillus subtilisBacterial ProteinsDesiccationKineticsLightPhotochemical ProcessesPhotoreceptors, MicrobialWaterBacterial ProteinsPhotoreceptors, MicrobialWater

Identifiers

PMID25211155
PMCPMC4161478

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.