Evidence map›Paper›PMID 25211029›Full record

ArticlePloS one2014

The influence of oxygen on [NiFe]-hydrogenase cofactor biosynthesis and how ligation of carbon monoxide precedes cyanation.

Sven T Stripp, Ute Lindenstrauss, Claudia Granich, R Gary Sawers, Basem Soboh

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Enhanced Phototrophic Biomass Productivity through Supply of Hydrogen Gas.Environmental science & technology letters · 2020
    Article
  5. Article
  6. Article
  7. Review
  8. Biosynthesis of Salmonella enterica [NiFe]-hydrogenase-5: probing the roles of system-specific accessory proteins.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2016
    Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sven T StrippDepartment of Physics, Freie Universität Berlin, Berlin, Germany.
Ute LindenstraussInstitute of Microbiology, Martin-Luther Universität Halle-Wittenberg, Halle (Saale), Germany.
Claudia GranichInstitute of Microbiology, Martin-Luther Universität Halle-Wittenberg, Halle (Saale), Germany.
R Gary SawersInstitute of Microbiology, Martin-Luther Universität Halle-Wittenberg, Halle (Saale), Germany.
Basem SobohInstitute of Microbiology, Martin-Luther Universität Halle-Wittenberg, Halle (Saale), Germany.
Freie Universität Berlin · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The class of [NiFe]-hydrogenases is characterized by a bimetallic cofactor comprising low-spin nickel and iron ions, the latter of which is modified with a single carbon monoxide (CO) and two cyanide (CN-) molecules. Generation of these ligands in vivo requires a complex maturation apparatus in which the HypC-HypD complex acts as a 'construction site' for the Fe-(CN)2CO portion of the cofactor. The order of addition of the CO and CN- ligands determines the ultimate structure and catalytic efficiency of the cofactor; however much debate surrounds the succession of events. Here, we present an FT-IR spectroscopic analysis of HypC-HypD isolated from a hydrogenase-competent wild-type strain of Escherichia coli. In contrast to previously reported samples, HypC-HypD showed spectral contributions indicative of an electron-rich Fe-CO cofactor, at the same time lacking any Fe-CN- signatures. This immature iron site binds external CO and undergoes oxidative damage when in contact with O2. Binding of CO protects the site against loss of spectral features associated with O2 damage. Our findings strongly suggest that CO ligation precedes cyanation in vivo. Furthermore, the results provide a rationale for the deleterious effects of O2 on in vivo cofactor biosynthesis.

Indexed as

Escherichia coliCarbon MonoxideCoenzymesCyanidesEscherichia coli ProteinsHydrogen PeroxideIronKineticsNickelOxygenProteinsSpectroscopy, Fourier Transform InfraredCarbon MonoxideCoenzymesCyanidesEscherichia coli ProteinsHydrogen PeroxideHypC protein, E coliHypD protein, BacteriaIronNickelOxygenProteins

Identifiers

PMID25211029
PMCPMC4161419
OpenAlexW2016619408

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.