Evidence map›Paper›PMID 25209999›Full record

ArticleeLife2014

Divergent mechanisms regulate conserved cardiopharyngeal development and gene expression in distantly related ascidians.

Alberto Stolfi, Elijah K Lowe, Claudia Racioppi, Filomena Ristoratore, C Titus Brown, Billie J Swalla, Lionel Christiaen

Abstract read
In one paragraph

Article in eLife, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

  1. The tunicate Ciona.Nature methods · 2025
    Article
  2. Article
  3. A new dawn for the study of cell type evolution.Development (Cambridge, England) · 2024
    Review
  4. Article
  5. Article
  6. Article
  7. The Biological bulletin · 2023
    Article
  8. Evolutionary Change in Gut Specification inJournal of developmental biology · 2023
    Review
  9. Overview of Head Muscles with Special Emphasis on Extraocular Muscle Development.Advances in anatomy, embryology, and cell biology · 2023
    Article
  10. The Genome of the "Sea Vomit"Life (Basel, Switzerland) · 2021
    Article
  11. Bio-protocol · 2021
    Article
  12. The Degenerate Tale of Ascidian Tails.Integrative and comparative biology · 2021
    Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Alberto StolfiCenter for Developmental Genetics, Department of Biology, New York University, New York, United States.
Elijah K LoweDepartment of Computer Science and Engineering, Michigan State University, East Lansing, United States.
Claudia RacioppiCellular and Developmental Biology Laboratory, Stazione Zoologica Anton Dohrn, Napoli, Italy.
Filomena RistoratoreCellular and Developmental Biology Laboratory, Stazione Zoologica Anton Dohrn, Napoli, Italy.
C Titus BrownDepartment of Computer Science and Engineering, Michigan State University, East Lansing, United States.
Billie J SwallaDepartment of Biology, University of Washington, Seattle, United States.
Lionel ChristiaenCenter for Developmental Genetics, Department of Biology, New York University, New York, United States.

Funding

Transcriptional control of collective cell migrationR01GM096032 · NIGMS · NEW YORK UNIVERSITY · PI CHRISTIAEN, LIONEL · 2010 to 2020
$3.0M
NIGMS NIH HHS R01 GM096032NIGMS NIH HHS R01GM096032
6 · The paper itself

Abstract

Ascidians present a striking dichotomy between conserved phenotypes and divergent genomes: embryonic cell lineages and gene expression patterns are conserved between distantly related species. Much research has focused on Ciona or Halocynthia spp. but development in other ascidians remains poorly characterized. In this study, we surveyed the multipotent myogenic B7.5 lineage in Molgula spp. Comparisons to the homologous lineage in Ciona revealed identical cell division and fate specification events that result in segregation of larval, cardiac, and pharyngeal muscle progenitors. Moreover, the expression patterns of key regulators are conserved, but cross-species transgenic assays uncovered incompatibility, or 'unintelligibility', of orthologous cis-regulatory sequences between Molgula and Ciona. These sequences drive identical expression patterns that are not recapitulated in cross-species assays. We show that this unintelligibility is likely due to changes in both cis- and trans-acting elements, hinting at widespread and frequent turnover of regulatory mechanisms underlying otherwise conserved aspects of ascidian embryogenesis.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBody PatterningCell LineageCell MovementCiona intestinalisEmbryo, NonmammalianEnzyme ActivationGenes, ReporterGenomeHeartMesodermMitogen-Activated Protein KinasesMusclesPharynxRegulatory Sequences, Nucleic AcidMitogen-Activated Protein Kinasesascidianscardiopharyngeal mesodermdevelopmentdevelopmental biologyDSDevolutionevolutionary biologygenomicsstem cellstunicates

Identifiers

PMID25209999
PMCPMC4356046

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.